Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.3■□□□□ 0.36
CCNA1P78396 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.3■□□□□ 0.36
CCNA1P78396 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.3■□□□□ 0.36
CCNA1P78396 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC17.3■□□□□ 0.36
CCNA1P78396 CSH2-206ENST00000560142 749 ntTSL 5 BASIC17.3■□□□□ 0.36
CCNA1P78396 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 MIR4722-201ENST00000578292 60 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 MIR3907-201ENST00000579424 151 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 AL162426.1-201ENST00000624141 743 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 AC128714.1-201ENST00000637035 887 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 AC002472.3-201ENST00000640124 621 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.3■□□□□ 0.36
CCNA1P78396 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCNA1P78396 TNRC18P3-201ENST00000441896 2691 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.3■□□□□ 0.36
CCNA1P78396 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.3■□□□□ 0.36
CCNA1P78396 AC068587.6-202ENST00000641839 5619 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.29■□□□□ 0.36
CCNA1P78396 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCNA1P78396 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 AL603832.2-201ENST00000566195 2125 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 AL360270.3-201ENST00000609118 1348 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.29■□□□□ 0.36
CCNA1P78396 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.29■□□□□ 0.36
CCNA1P78396 RN7SKP175-201ENST00000408472 289 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 AC007274.2-201ENST00000421675 662 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 FAM58BP-201ENST00000439056 645 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 NUP210P1-202ENST00000504322 710 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 MARK2P5-201ENST00000507649 634 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC17.29■□□□□ 0.36
CCNA1P78396 HNRNPA1P36-201ENST00000521313 955 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.29■□□□□ 0.36
CCNA1P78396 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.29■□□□□ 0.36
CCNA1P78396 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 MIR4683-201ENST00000579659 81 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 MIR4706-201ENST00000582134 82 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 AL358472.3-201ENST00000608147 415 ntBASIC17.29■□□□□ 0.36
CCNA1P78396 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.29■□□□□ 0.36
CCNA1P78396 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.29■□□□□ 0.36
CCNA1P78396 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
CCNA1P78396 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.29■□□□□ 0.36
CCNA1P78396 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCNA1P78396 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.29■□□□□ 0.36
CCNA1P78396 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CCNA1P78396 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.28■□□□□ 0.36
CCNA1P78396 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCNA1P78396 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCNA1P78396 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.28■□□□□ 0.36
CCNA1P78396 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 AC092127.1-201ENST00000567093 3455 ntBASIC17.28■□□□□ 0.36
CCNA1P78396 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCNA1P78396 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.28■□□□□ 0.36
CCNA1P78396 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCNA1P78396 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.28■□□□□ 0.36
CCNA1P78396 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.28■□□□□ 0.36
CCNA1P78396 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.28■□□□□ 0.36
CCNA1P78396 SLC16A6P1-201ENST00000413214 1059 ntBASIC17.28■□□□□ 0.36
CCNA1P78396 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.28■□□□□ 0.36
CCNA1P78396 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.28■□□□□ 0.36
CCNA1P78396 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.28■□□□□ 0.36
CCNA1P78396 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.28■□□□□ 0.36
CCNA1P78396 AC104073.2-201ENST00000453737 312 ntBASIC17.28■□□□□ 0.36
CCNA1P78396 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.28■□□□□ 0.36
CCNA1P78396 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCNA1P78396 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.28■□□□□ 0.36
CCNA1P78396 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms