Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 MIR600HG-201ENST00000449175 5984 ntBASIC14.22□□□□□ -0.13
RNF4P78317 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.22□□□□□ -0.13
RNF4P78317 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 AC114812.1-204ENST00000449669 728 ntBASIC14.22□□□□□ -0.13
RNF4P78317 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 KRT18P25-201ENST00000508931 1278 ntBASIC14.22□□□□□ -0.13
RNF4P78317 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 AL162274.1-201ENST00000617191 1098 ntBASIC14.22□□□□□ -0.13
RNF4P78317 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.22□□□□□ -0.13
RNF4P78317 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 AL158070.2-201ENST00000623713 1621 ntBASIC14.22□□□□□ -0.13
RNF4P78317 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
RNF4P78317 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
RNF4P78317 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
RNF4P78317 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
RNF4P78317 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.21□□□□□ -0.13
RNF4P78317 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 AC005229.1-201ENST00000392885 409 ntBASIC14.21□□□□□ -0.13
RNF4P78317 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.21□□□□□ -0.13
RNF4P78317 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RNF4P78317 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.21□□□□□ -0.13
RNF4P78317 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.21□□□□□ -0.13
RNF4P78317 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.21□□□□□ -0.13
RNF4P78317 AL355864.2-201ENST00000447420 863 ntBASIC14.21□□□□□ -0.13
RNF4P78317 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.21□□□□□ -0.13
RNF4P78317 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.21□□□□□ -0.13
RNF4P78317 AP001889.1-201ENST00000525414 633 ntBASIC14.21□□□□□ -0.13
RNF4P78317 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.21□□□□□ -0.13
RNF4P78317 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.21□□□□□ -0.13
RNF4P78317 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
RNF4P78317 AL022328.1-201ENST00000610050 478 ntBASIC14.21□□□□□ -0.13
RNF4P78317 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 PRSS30P-206ENST00000641773 873 ntBASIC14.21□□□□□ -0.13
RNF4P78317 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RNF4P78317 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.21□□□□□ -0.13
RNF4P78317 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RNF4P78317 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.21□□□□□ -0.13
RNF4P78317 AC148477.4-201ENST00000613430 1793 ntBASIC14.21□□□□□ -0.13
RNF4P78317 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RNF4P78317 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RNF4P78317 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
RNF4P78317 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
RNF4P78317 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RNF4P78317 KRT8P44-201ENST00000441609 1350 ntBASIC14.21□□□□□ -0.14
RNF4P78317 AC018665.1-201ENST00000622927 1362 ntBASIC14.21□□□□□ -0.14
RNF4P78317 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
RNF4P78317 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 AC126365.1-201ENST00000578585 1514 ntBASIC14.2□□□□□ -0.14
RNF4P78317 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms