Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
COL4A4P53420 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A4P53420 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A4P53420 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.02■□□□□ 0.16
COL4A4P53420 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.02■□□□□ 0.16
COL4A4P53420 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.02■□□□□ 0.16
COL4A4P53420 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A4P53420 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A4P53420 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
COL4A4P53420 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.02■□□□□ 0.15
COL4A4P53420 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.02■□□□□ 0.15
COL4A4P53420 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A4P53420 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A4P53420 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A4P53420 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.02■□□□□ 0.15
COL4A4P53420 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A4P53420 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
COL4A4P53420 AL139008.1-201ENST00000437894 228 ntBASIC16.02■□□□□ 0.15
COL4A4P53420 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.02■□□□□ 0.15
COL4A4P53420 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.02■□□□□ 0.15
COL4A4P53420 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
COL4A4P53420 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.02■□□□□ 0.15
COL4A4P53420 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.02■□□□□ 0.15
COL4A4P53420 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.15
COL4A4P53420 AC005618.3-201ENST00000624928 458 ntBASIC16.02■□□□□ 0.15
COL4A4P53420 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A4P53420 AC009093.2-202ENST00000620513 2079 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 MBLAC2-202ENST00000514906 1936 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 AC006486.2-201ENST00000624246 2199 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.01■□□□□ 0.15
COL4A4P53420 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.01■□□□□ 0.15
COL4A4P53420 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 RPL18AP3-201ENST00000462885 528 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 AC022616.1-201ENST00000518688 554 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 AP002803.1-201ENST00000528836 498 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A4P53420 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.01■□□□□ 0.15
COL4A4P53420 AP000845.1-201ENST00000581677 2131 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.01■□□□□ 0.15
COL4A4P53420 AC009084.3-201ENST00000623356 437 ntBASIC16.01■□□□□ 0.15
COL4A4P53420 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A4P53420 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A4P53420 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL4A4P53420 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16■□□□□ 0.15
COL4A4P53420 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16■□□□□ 0.15
COL4A4P53420 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16■□□□□ 0.15
COL4A4P53420 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 PIN4P1-201ENST00000451079 396 ntBASIC16■□□□□ 0.15
COL4A4P53420 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC16■□□□□ 0.15
COL4A4P53420 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16■□□□□ 0.15
COL4A4P53420 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16■□□□□ 0.15
COL4A4P53420 AL109837.1-201ENST00000603272 613 ntBASIC16■□□□□ 0.15
COL4A4P53420 AC073911.3-201ENST00000624401 631 ntBASIC16■□□□□ 0.15
COL4A4P53420 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL4A4P53420 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms