Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.56□□□□□ -0.24
CX3CR1P49238 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CX3CR1P49238 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.56□□□□□ -0.24
CX3CR1P49238 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.56□□□□□ -0.24
CX3CR1P49238 AC107890.1-201ENST00000422478 521 ntBASIC13.56□□□□□ -0.24
CX3CR1P49238 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
CX3CR1P49238 RPL13P2-201ENST00000440687 659 ntBASIC13.56□□□□□ -0.24
CX3CR1P49238 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 AC027369.6-201ENST00000525520 931 ntBASIC13.56□□□□□ -0.24
CX3CR1P49238 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.56□□□□□ -0.24
CX3CR1P49238 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.56□□□□□ -0.24
CX3CR1P49238 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.56□□□□□ -0.24
CX3CR1P49238 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.56□□□□□ -0.24
CX3CR1P49238 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 AL109936.8-201ENST00000641772 604 ntBASIC13.56□□□□□ -0.24
CX3CR1P49238 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
CX3CR1P49238 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CX3CR1P49238 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CX3CR1P49238 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CX3CR1P49238 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CX3CR1P49238 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 CICP23-201ENST00000605013 2741 ntBASIC13.55□□□□□ -0.24
CX3CR1P49238 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 GHSR-202ENST00000427970 912 ntBASIC13.55□□□□□ -0.24
CX3CR1P49238 KRT18P43-201ENST00000469825 1281 ntBASIC13.55□□□□□ -0.24
CX3CR1P49238 AC067863.1-201ENST00000494933 530 ntBASIC13.55□□□□□ -0.24
CX3CR1P49238 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.55□□□□□ -0.24
CX3CR1P49238 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 AC140878.1-201ENST00000565277 250 ntBASIC13.55□□□□□ -0.24
CX3CR1P49238 LSM12-202ENST00000585388 942 ntTSL 3 BASIC13.55□□□□□ -0.24
CX3CR1P49238 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
CX3CR1P49238 AC013726.1-201ENST00000563747 2285 ntBASIC13.55□□□□□ -0.24
CX3CR1P49238 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CX3CR1P49238 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CR1P49238 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CR1P49238 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CR1P49238 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CR1P49238 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.54□□□□□ -0.24
CX3CR1P49238 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CR1P49238 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CR1P49238 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CR1P49238 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CX3CR1P49238 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CR1P49238 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CR1P49238 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms