Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 PCDHA12-202ENST00000613593 2588 ntBASIC16.73■□□□□ 0.27
HTTP42858 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.73■□□□□ 0.27
HTTP42858 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HTTP42858 AC092850.2-201ENST00000623821 2697 ntBASIC16.73■□□□□ 0.27
HTTP42858 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HTTP42858 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.73■□□□□ 0.27
HTTP42858 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 AC024909.3-201ENST00000611513 2257 ntBASIC16.72■□□□□ 0.27
HTTP42858 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HTTP42858 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 RN7SL494P-201ENST00000461517 304 ntBASIC16.72■□□□□ 0.27
HTTP42858 AC026470.1-201ENST00000478038 846 ntBASIC16.72■□□□□ 0.27
HTTP42858 AC090510.3-201ENST00000615831 821 ntBASIC16.72■□□□□ 0.27
HTTP42858 LTB4R2-202ENST00000528054 3092 ntBASIC16.72■□□□□ 0.27
HTTP42858 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HTTP42858 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HTTP42858 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HTTP42858 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC16.72■□□□□ 0.27
HTTP42858 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC16.72■□□□□ 0.27
HTTP42858 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
HTTP42858 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HTTP42858 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HTTP42858 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HTTP42858 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.72■□□□□ 0.27
HTTP42858 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HTTP42858 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC16.72■□□□□ 0.27
HTTP42858 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
HTTP42858 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.71■□□□□ 0.27
HTTP42858 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC16.71■□□□□ 0.27
HTTP42858 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.71■□□□□ 0.27
HTTP42858 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.71■□□□□ 0.27
HTTP42858 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HTTP42858 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.71■□□□□ 0.27
HTTP42858 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 FAM90A21P-201ENST00000510875 1396 ntBASIC16.71■□□□□ 0.27
HTTP42858 FAM90A15P-201ENST00000514465 1395 ntBASIC16.71■□□□□ 0.27
HTTP42858 FAM90A6P-201ENST00000515148 1394 ntBASIC16.71■□□□□ 0.27
HTTP42858 FAM90A16P-201ENST00000526662 1395 ntBASIC16.71■□□□□ 0.27
HTTP42858 FAM90A9P-201ENST00000527940 1395 ntBASIC16.71■□□□□ 0.27
HTTP42858 FAM90A5P-201ENST00000528738 1395 ntBASIC16.71■□□□□ 0.27
HTTP42858 FAM90A14P-201ENST00000530386 1395 ntBASIC16.71■□□□□ 0.27
HTTP42858 FAM90A13P-201ENST00000534703 1395 ntBASIC16.71■□□□□ 0.27
HTTP42858 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HTTP42858 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.71■□□□□ 0.27
HTTP42858 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
HTTP42858 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.71■□□□□ 0.27
HTTP42858 MIR3180-2-201ENST00000581748 88 ntBASIC16.71■□□□□ 0.27
HTTP42858 MIR4472-1-201ENST00000584349 80 ntBASIC16.71■□□□□ 0.27
HTTP42858 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.71■□□□□ 0.27
HTTP42858 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HTTP42858 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HTTP42858 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.71■□□□□ 0.26
HTTP42858 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HTTP42858 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
HTTP42858 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
HTTP42858 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.71■□□□□ 0.26
HTTP42858 AC023090.2-201ENST00000625182 2110 ntBASIC16.71■□□□□ 0.26
HTTP42858 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HTTP42858 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.7■□□□□ 0.26
HTTP42858 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.7■□□□□ 0.26
HTTP42858 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC16.7■□□□□ 0.26
HTTP42858 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.7■□□□□ 0.26
HTTP42858 DUT-207ENST00000559416 635 ntTSL 2 BASIC16.7■□□□□ 0.26
HTTP42858 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC16.7■□□□□ 0.26
HTTP42858 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.7■□□□□ 0.26
HTTP42858 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
HTTP42858 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HTTP42858 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HTTP42858 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms