Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.6■□□□□ 0.41
SCN4AP35499 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.6■□□□□ 0.41
SCN4AP35499 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
SCN4AP35499 HNRNPA1P58-201ENST00000403629 610 ntBASIC17.6■□□□□ 0.41
SCN4AP35499 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.6■□□□□ 0.41
SCN4AP35499 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 RN7SL665P-201ENST00000578793 300 ntBASIC17.6■□□□□ 0.41
SCN4AP35499 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC17.6■□□□□ 0.41
SCN4AP35499 AC010976.2-201ENST00000609697 852 ntBASIC17.6■□□□□ 0.41
SCN4AP35499 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC17.6■□□□□ 0.41
SCN4AP35499 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.6■□□□□ 0.41
SCN4AP35499 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SCN4AP35499 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SCN4AP35499 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SCN4AP35499 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC17.59■□□□□ 0.41
SCN4AP35499 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC17.59■□□□□ 0.41
SCN4AP35499 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC17.59■□□□□ 0.41
SCN4AP35499 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC17.59■□□□□ 0.41
SCN4AP35499 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
SCN4AP35499 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC17.59■□□□□ 0.41
SCN4AP35499 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC17.59■□□□□ 0.41
SCN4AP35499 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC17.59■□□□□ 0.41
SCN4AP35499 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC17.59■□□□□ 0.41
SCN4AP35499 AL035414.1-201ENST00000451327 857 ntBASIC17.59■□□□□ 0.41
SCN4AP35499 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.59■□□□□ 0.41
SCN4AP35499 HERC2P11-201ENST00000562845 725 ntBASIC17.59■□□□□ 0.41
SCN4AP35499 AC100756.2-201ENST00000569537 736 ntBASIC17.59■□□□□ 0.41
SCN4AP35499 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC17.59■□□□□ 0.41
SCN4AP35499 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC17.59■□□□□ 0.41
SCN4AP35499 AC012073.1-201ENST00000606114 1108 ntBASIC17.59■□□□□ 0.41
SCN4AP35499 AL139339.2-201ENST00000608063 657 ntBASIC17.59■□□□□ 0.41
SCN4AP35499 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.59■□□□□ 0.41
SCN4AP35499 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC17.59■□□□□ 0.41
SCN4AP35499 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
SCN4AP35499 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 FLJ38576-201ENST00000623820 2459 ntBASIC17.59■□□□□ 0.41
SCN4AP35499 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.59■□□□□ 0.41
SCN4AP35499 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SCN4AP35499 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.59■□□□□ 0.41
SCN4AP35499 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SCN4AP35499 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
SCN4AP35499 AC073869.2-201ENST00000417338 1026 ntBASIC17.58■□□□□ 0.41
SCN4AP35499 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 AC026470.1-201ENST00000478038 846 ntBASIC17.58■□□□□ 0.41
SCN4AP35499 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC17.58■□□□□ 0.41
SCN4AP35499 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC17.58■□□□□ 0.41
SCN4AP35499 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC17.58■□□□□ 0.41
SCN4AP35499 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
SCN4AP35499 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.58■□□□□ 0.41
SCN4AP35499 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.58■□□□□ 0.41
SCN4AP35499 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.41
SCN4AP35499 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.58■□□□□ 0.41
SCN4AP35499 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SCN4AP35499 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.58■□□□□ 0.4
SCN4AP35499 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SCN4AP35499 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SCN4AP35499 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
SCN4AP35499 AL672207.1-201ENST00000328462 1570 ntBASIC17.58■□□□□ 0.4
SCN4AP35499 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SCN4AP35499 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC17.58■□□□□ 0.4
SCN4AP35499 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC17.58■□□□□ 0.4
SCN4AP35499 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.58■□□□□ 0.4
SCN4AP35499 MIR6746-201ENST00000620971 63 ntBASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms