Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGA1P17096 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
HMGA1P17096 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 RN7SKP230-201ENST00000365642 335 ntBASIC15.75■□□□□ 0.11
HMGA1P17096 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGA1P17096 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
HMGA1P17096 AL354877.1-201ENST00000424412 413 ntBASIC15.75■□□□□ 0.11
HMGA1P17096 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGA1P17096 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.75■□□□□ 0.11
HMGA1P17096 AC091804.1-201ENST00000486888 567 ntBASIC15.75■□□□□ 0.11
HMGA1P17096 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 AC126915.1-201ENST00000522847 1038 ntBASIC15.75■□□□□ 0.11
HMGA1P17096 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGA1P17096 AC005730.2-201ENST00000564549 1184 ntBASIC15.75■□□□□ 0.11
HMGA1P17096 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HMGA1P17096 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 REXO1L2P-201ENST00000425429 2069 ntBASIC15.75■□□□□ 0.11
HMGA1P17096 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGA1P17096 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGA1P17096 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGA1P17096 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
HMGA1P17096 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.74■□□□□ 0.11
HMGA1P17096 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.74■□□□□ 0.11
HMGA1P17096 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.74■□□□□ 0.11
HMGA1P17096 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.74■□□□□ 0.11
HMGA1P17096 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HMGA1P17096 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC15.74■□□□□ 0.11
HMGA1P17096 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 AKR7A2P1-201ENST00000460134 915 ntBASIC15.74■□□□□ 0.11
HMGA1P17096 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.74■□□□□ 0.11
HMGA1P17096 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.74■□□□□ 0.11
HMGA1P17096 AL358472.3-201ENST00000608147 415 ntBASIC15.74■□□□□ 0.11
HMGA1P17096 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.74■□□□□ 0.11
HMGA1P17096 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGA1P17096 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGA1P17096 AC020910.5-201ENST00000623668 1865 ntBASIC15.74■□□□□ 0.11
HMGA1P17096 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
HMGA1P17096 AC011840.2-201ENST00000563063 1520 ntBASIC15.73■□□□□ 0.11
HMGA1P17096 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGA1P17096 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
HMGA1P17096 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
HMGA1P17096 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HMGA1P17096 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
HMGA1P17096 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGA1P17096 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGA1P17096 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
HMGA1P17096 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
HMGA1P17096 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
HMGA1P17096 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGA1P17096 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGA1P17096 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.73■□□□□ 0.11
HMGA1P17096 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms