Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PDGFRAP16234 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.13■□□□□ 0.17
PDGFRAP16234 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PDGFRAP16234 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.13■□□□□ 0.17
PDGFRAP16234 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.13■□□□□ 0.17
PDGFRAP16234 AL359258.3-201ENST00000622910 2331 ntBASIC16.13■□□□□ 0.17
PDGFRAP16234 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.13■□□□□ 0.17
PDGFRAP16234 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PDGFRAP16234 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PDGFRAP16234 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.13■□□□□ 0.17
PDGFRAP16234 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFRAP16234 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.13■□□□□ 0.17
PDGFRAP16234 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PDGFRAP16234 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PDGFRAP16234 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 REXO1L4P-201ENST00000605109 1937 ntBASIC16.12■□□□□ 0.17
PDGFRAP16234 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.12■□□□□ 0.17
PDGFRAP16234 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 LINC00528-201ENST00000600723 2160 ntBASIC16.12■□□□□ 0.17
PDGFRAP16234 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFRAP16234 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.12■□□□□ 0.17
PDGFRAP16234 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PDGFRAP16234 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 AC004066.1-201ENST00000502488 802 ntBASIC16.12■□□□□ 0.17
PDGFRAP16234 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFRAP16234 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFRAP16234 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.12■□□□□ 0.17
PDGFRAP16234 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.12■□□□□ 0.17
PDGFRAP16234 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.12■□□□□ 0.17
PDGFRAP16234 BRI3BPP1-201ENST00000594224 787 ntBASIC16.12■□□□□ 0.17
PDGFRAP16234 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.12■□□□□ 0.17
PDGFRAP16234 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.12■□□□□ 0.17
PDGFRAP16234 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.12■□□□□ 0.17
PDGFRAP16234 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFRAP16234 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.12■□□□□ 0.17
PDGFRAP16234 AL358472.5-202ENST00000641448 1267 ntBASIC16.12■□□□□ 0.17
PDGFRAP16234 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
PDGFRAP16234 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFRAP16234 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.11■□□□□ 0.17
PDGFRAP16234 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFRAP16234 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFRAP16234 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFRAP16234 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFRAP16234 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFRAP16234 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFRAP16234 AC005034.1-201ENST00000426657 489 ntBASIC16.11■□□□□ 0.17
PDGFRAP16234 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFRAP16234 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFRAP16234 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFRAP16234 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFRAP16234 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFRAP16234 AC107373.2-201ENST00000607735 490 ntBASIC16.11■□□□□ 0.17
PDGFRAP16234 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
PDGFRAP16234 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.11■□□□□ 0.17
PDGFRAP16234 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFRAP16234 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.11■□□□□ 0.17
PDGFRAP16234 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms