Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 FLJ16779-201ENST00000612722 7638 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 RPL17P11-201ENST00000417593 544 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 MARK2P5-201ENST00000507649 634 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AL358472.3-201ENST00000608147 415 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AC090164.2-201ENST00000611487 516 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AP000346.4-201ENST00000614827 381 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AL136295.7-201ENST00000619226 1200 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 PCBP2-OT1-201ENST00000634357 590 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CSB-PGBD3P0DP91 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CSB-PGBD3P0DP91 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CSB-PGBD3P0DP91 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.82
CSB-PGBD3P0DP91 NKILA-202ENST00000614771 2598 ntBASIC20.14■□□□□ 0.82
CSB-PGBD3P0DP91 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CSB-PGBD3P0DP91 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 PARVG-202ENST00000415224 999 ntTSL 2 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 AC125604.1-201ENST00000496255 707 ntBASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 DUX4L47-201ENST00000566374 394 ntBASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 AC002472.3-201ENST00000640124 621 ntBASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CSB-PGBD3P0DP91 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 AC020922.3-201ENST00000595064 547 ntBASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 AC112504.1-201ENST00000623415 1841 ntBASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CSB-PGBD3P0DP91 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms