Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
APOEP02649 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.13■□□□□ 0.17
APOEP02649 RN7SL752P-201ENST00000463779 287 ntBASIC16.13■□□□□ 0.17
APOEP02649 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 AC011495.1-201ENST00000498085 584 ntBASIC16.13■□□□□ 0.17
APOEP02649 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.13■□□□□ 0.17
APOEP02649 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
APOEP02649 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
APOEP02649 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.13■□□□□ 0.17
APOEP02649 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.13■□□□□ 0.17
APOEP02649 AC133539.2-201ENST00000604757 467 ntBASIC16.13■□□□□ 0.17
APOEP02649 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 AC009090.5-201ENST00000624886 2285 ntBASIC16.13■□□□□ 0.17
APOEP02649 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.12■□□□□ 0.17
APOEP02649 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.12■□□□□ 0.17
APOEP02649 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.12■□□□□ 0.17
APOEP02649 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 RPL5P21-201ENST00000404620 815 ntBASIC16.12■□□□□ 0.17
APOEP02649 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.12■□□□□ 0.17
APOEP02649 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.12■□□□□ 0.17
APOEP02649 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.12■□□□□ 0.17
APOEP02649 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.12■□□□□ 0.17
APOEP02649 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.12■□□□□ 0.17
APOEP02649 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.12■□□□□ 0.17
APOEP02649 AC025181.2-201ENST00000606994 802 ntBASIC16.12■□□□□ 0.17
APOEP02649 WFDC1-204ENST00000613603 549 ntBASIC16.12■□□□□ 0.17
APOEP02649 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.12■□□□□ 0.17
APOEP02649 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
APOEP02649 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.12■□□□□ 0.17
APOEP02649 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.12■□□□□ 0.17
APOEP02649 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 SBF1P1-201ENST00000444527 5631 ntBASIC16.12■□□□□ 0.17
APOEP02649 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.12■□□□□ 0.17
APOEP02649 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
APOEP02649 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 CU639417.3-201ENST00000624240 1404 ntBASIC16.11■□□□□ 0.17
APOEP02649 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 C18orf15-201ENST00000623680 2534 ntBASIC16.11■□□□□ 0.17
APOEP02649 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
APOEP02649 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms