Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
NPHP4O75161 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP4O75161 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP4O75161 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP4O75161 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP4O75161 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP4O75161 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
NPHP4O75161 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
NPHP4O75161 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP4O75161 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
NPHP4O75161 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC20.97■□□□□ 0.95
NPHP4O75161 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
NPHP4O75161 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC20.97■□□□□ 0.95
NPHP4O75161 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
NPHP4O75161 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
NPHP4O75161 TLE1P1-201ENST00000422965 589 ntBASIC20.97■□□□□ 0.95
NPHP4O75161 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP4O75161 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC20.97■□□□□ 0.95
NPHP4O75161 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 BX088702.1-201ENST00000610784 235 ntBASIC20.97■□□□□ 0.95
NPHP4O75161 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP4O75161 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 AL672207.1-201ENST00000328462 1570 ntBASIC20.97■□□□□ 0.95
NPHP4O75161 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 AL596087.1-201ENST00000400979 1969 ntBASIC20.97■□□□□ 0.95
NPHP4O75161 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP4O75161 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
NPHP4O75161 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
NPHP4O75161 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
NPHP4O75161 UROS-201ENST00000368774 744 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP4O75161 HNRNPA1P58-201ENST00000403629 610 ntBASIC20.96■□□□□ 0.95
NPHP4O75161 RPL35P9-201ENST00000446059 350 ntBASIC20.96■□□□□ 0.95
NPHP4O75161 AL035414.1-201ENST00000451327 857 ntBASIC20.96■□□□□ 0.95
NPHP4O75161 DUX4L50-201ENST00000455245 715 ntBASIC20.96■□□□□ 0.95
NPHP4O75161 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 RHEB-207ENST00000496004 744 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP4O75161 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC20.96■□□□□ 0.95
NPHP4O75161 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC20.96■□□□□ 0.95
NPHP4O75161 AC009145.4-201ENST00000625119 1294 ntBASIC20.96■□□□□ 0.95
NPHP4O75161 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP4O75161 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP4O75161 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP4O75161 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NPHP4O75161 BRI3P1-201ENST00000440440 378 ntBASIC20.95■□□□□ 0.95
NPHP4O75161 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
NPHP4O75161 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC20.95■□□□□ 0.95
NPHP4O75161 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC20.95■□□□□ 0.95
NPHP4O75161 MIR2392-201ENST00000584881 84 ntBASIC20.95■□□□□ 0.95
NPHP4O75161 AC140113.1-201ENST00000603467 169 ntBASIC20.95■□□□□ 0.95
NPHP4O75161 AC006548.2-201ENST00000605217 529 ntBASIC20.95■□□□□ 0.95
NPHP4O75161 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP4O75161 MTHFR-217ENST00000641820 1569 ntBASIC20.95■□□□□ 0.94
NPHP4O75161 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
NPHP4O75161 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
NPHP4O75161 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP4O75161 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 AC004554.1-201ENST00000422830 1468 ntBASIC20.95■□□□□ 0.94
NPHP4O75161 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP4O75161 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP4O75161 ZBED1P1-201ENST00000502364 1930 ntBASIC20.95■□□□□ 0.94
NPHP4O75161 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 AHCYP4-201ENST00000419201 1315 ntBASIC20.95■□□□□ 0.94
NPHP4O75161 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP4O75161 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP4O75161 RN7SL494P-201ENST00000461517 304 ntBASIC20.95■□□□□ 0.94
NPHP4O75161 PPIA-208ENST00000489459 907 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP4O75161 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
NPHP4O75161 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC20.95■□□□□ 0.94
NPHP4O75161 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP4O75161 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms