Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CUX2O14529 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CUX2O14529 FBXO36P1-201ENST00000579006 471 ntBASIC25.53■■□□□ 1.68
CUX2O14529 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC25.53■■□□□ 1.68
CUX2O14529 AC009884.2-201ENST00000603110 324 ntBASIC25.53■■□□□ 1.68
CUX2O14529 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC25.53■■□□□ 1.68
CUX2O14529 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC25.53■■□□□ 1.68
CUX2O14529 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CUX2O14529 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CUX2O14529 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
CUX2O14529 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC25.52■■□□□ 1.68
CUX2O14529 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC25.52■■□□□ 1.68
CUX2O14529 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CUX2O14529 SIGLEC20P-201ENST00000595243 1311 ntBASIC25.52■■□□□ 1.68
CUX2O14529 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CUX2O14529 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC25.52■■□□□ 1.68
CUX2O14529 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CUX2O14529 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
CUX2O14529 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC25.52■■□□□ 1.68
CUX2O14529 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CUX2O14529 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC25.52■■□□□ 1.68
CUX2O14529 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC25.52■■□□□ 1.68
CUX2O14529 AC068831.5-201ENST00000557387 328 ntBASIC25.52■■□□□ 1.68
CUX2O14529 AL450487.2-201ENST00000615934 407 ntBASIC25.52■■□□□ 1.68
CUX2O14529 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC25.52■■□□□ 1.68
CUX2O14529 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CUX2O14529 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
CUX2O14529 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC25.51■■□□□ 1.67
CUX2O14529 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC25.51■■□□□ 1.67
CUX2O14529 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC25.51■■□□□ 1.67
CUX2O14529 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 HLA-DQB1-202ENST00000399079 1501 ntBASIC25.51■■□□□ 1.67
CUX2O14529 AC021305.1-201ENST00000520656 1514 ntBASIC25.51■■□□□ 1.67
CUX2O14529 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 AC009093.2-202ENST00000620513 2079 ntBASIC25.51■■□□□ 1.67
CUX2O14529 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC25.51■■□□□ 1.67
CUX2O14529 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 FAM197Y6-201ENST00000420524 766 ntBASIC25.51■■□□□ 1.67
CUX2O14529 AC006122.1-201ENST00000493323 440 ntBASIC25.51■■□□□ 1.67
CUX2O14529 AC090820.1-201ENST00000519722 591 ntBASIC25.51■■□□□ 1.67
CUX2O14529 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC25.51■■□□□ 1.67
CUX2O14529 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC25.51■■□□□ 1.67
CUX2O14529 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC25.51■■□□□ 1.67
CUX2O14529 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CUX2O14529 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
CUX2O14529 MTHFR-217ENST00000641820 1569 ntBASIC25.51■■□□□ 1.67
CUX2O14529 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC25.5■■□□□ 1.67
CUX2O14529 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
CUX2O14529 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC25.5■■□□□ 1.67
CUX2O14529 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC25.5■■□□□ 1.67
CUX2O14529 AC138701.2-201ENST00000553634 226 ntBASIC25.5■■□□□ 1.67
CUX2O14529 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC25.5■■□□□ 1.67
CUX2O14529 APOC1-209ENST00000592885 562 ntTSL 3 BASIC25.5■■□□□ 1.67
CUX2O14529 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC25.5■■□□□ 1.67
CUX2O14529 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC25.5■■□□□ 1.67
CUX2O14529 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
CUX2O14529 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
CUX2O14529 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUX2O14529 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC25.5■■□□□ 1.67
CUX2O14529 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC25.49■■□□□ 1.67
CUX2O14529 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC25.49■■□□□ 1.67
CUX2O14529 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC25.49■■□□□ 1.67
CUX2O14529 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC25.49■■□□□ 1.67
CUX2O14529 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
CUX2O14529 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC25.49■■□□□ 1.67
CUX2O14529 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC25.49■■□□□ 1.67
CUX2O14529 AC254633.1-201ENST00000606790 345 ntBASIC25.49■■□□□ 1.67
CUX2O14529 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC25.49■■□□□ 1.67
CUX2O14529 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
CUX2O14529 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CUX2O14529 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
CUX2O14529 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms