Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 ACE3P-201ENST00000423435 1973 ntBASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
CLHC1Q8NHS4 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLHC1Q8NHS4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.83□□□□□ -0.03
CLHC1Q8NHS4 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.83□□□□□ -0.03
CLHC1Q8NHS4 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLHC1Q8NHS4 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.03
CLHC1Q8NHS4 REXO1L2P-201ENST00000425429 2069 ntBASIC14.83□□□□□ -0.03
CLHC1Q8NHS4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.83□□□□□ -0.03
CLHC1Q8NHS4 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 SERBP1P3-201ENST00000459980 809 ntBASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 WASH3P-207ENST00000560956 1394 ntBASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 FO538757.1-201ENST00000623083 1397 ntBASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 AC232323.1-201ENST00000540724 2099 ntBASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 REXO1L5P-201ENST00000622260 2098 ntBASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLHC1Q8NHS4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AC007292.2-201ENST00000593524 1812 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 CICP14-201ENST00000629111 2732 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AC117489.1-201ENST00000625169 3217 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AP006288.1-201ENST00000446065 395 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AC004967.1-201ENST00000453589 447 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AC069262.1-201ENST00000539058 672 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AL512361.1-201ENST00000554200 418 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 AC015910.1-201ENST00000579400 975 ntBASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLHC1Q8NHS4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms