Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 AL022344.2-201ENST00000568976 968 ntBASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 SNORD3B-2-202ENST00000571722 791 ntBASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 INE2-201ENST00000630399 1874 ntBASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC88AQ3V6T2 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AC010141.1-201ENST00000411585 623 ntBASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AC012362.1-201ENST00000434906 739 ntBASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AL132994.2-201ENST00000603120 687 ntBASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 NAP1L6-202ENST00000641404 1222 ntBASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AC112693.3-201ENST00000624819 1983 ntBASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AC092850.2-201ENST00000623821 2697 ntBASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC88AQ3V6T2 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 MIR4649-201ENST00000582839 64 ntBASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 AL162426.1-201ENST00000624141 743 ntBASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 AL132780.4-201ENST00000624870 1135 ntBASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC88AQ3V6T2 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AL512430.1-201ENST00000392575 860 ntBASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 TUBB8P8-201ENST00000458717 1058 ntBASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AC008805.1-201ENST00000590892 364 ntBASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AC107464.3-201ENST00000609172 737 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms