Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC10.71□□□□□ -0.7
PRKDCP78527 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC10.71□□□□□ -0.7
PRKDCP78527 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC10.71□□□□□ -0.7
PRKDCP78527 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC10.71□□□□□ -0.7
PRKDCP78527 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
PRKDCP78527 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.7
PRKDCP78527 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC10.71□□□□□ -0.7
PRKDCP78527 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
PRKDCP78527 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 ALG3P1-201ENST00000508806 1114 ntBASIC10.7□□□□□ -0.7
PRKDCP78527 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC10.7□□□□□ -0.7
PRKDCP78527 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC10.7□□□□□ -0.7
PRKDCP78527 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 CA12-203ENST00000422263 2556 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 KRT8P6-201ENST00000399259 1207 ntBASIC10.7□□□□□ -0.7
PRKDCP78527 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 AC078814.4-201ENST00000546650 327 ntBASIC10.7□□□□□ -0.7
PRKDCP78527 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 AC005865.2-202ENST00000635814 725 ntBASIC10.7□□□□□ -0.7
PRKDCP78527 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 NOC2LP2-201ENST00000407594 1944 ntBASIC10.7□□□□□ -0.7
PRKDCP78527 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC10.7□□□□□ -0.7
PRKDCP78527 RN7SL147P-201ENST00000487345 298 ntBASIC10.7□□□□□ -0.7
PRKDCP78527 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 AC003686.1-201ENST00000550956 1034 ntBASIC10.7□□□□□ -0.7
PRKDCP78527 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC10.7□□□□□ -0.7
PRKDCP78527 APOC1-209ENST00000592885 562 ntTSL 3 BASIC10.7□□□□□ -0.7
PRKDCP78527 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC10.7□□□□□ -0.7
PRKDCP78527 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PRKDCP78527 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
PRKDCP78527 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
PRKDCP78527 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 RN7SL288P-201ENST00000490496 291 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 AC226150.1-201ENST00000544259 466 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 RN7SL357P-201ENST00000581065 298 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 AL118522.1-201ENST00000611368 560 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC10.69□□□□□ -0.7
PRKDCP78527 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC10.69□□□□□ -0.7
PRKDCP78527 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC10.69□□□□□ -0.7
PRKDCP78527 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
PRKDCP78527 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC10.69□□□□□ -0.7
PRKDCP78527 AC112504.1-201ENST00000623415 1841 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 AL645608.8-201ENST00000606034 2086 ntBASIC10.69□□□□□ -0.7
PRKDCP78527 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC10.69□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms