Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC19.67■□□□□ 0.74
COL18A1P39060 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.67■□□□□ 0.74
COL18A1P39060 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC19.67■□□□□ 0.74
COL18A1P39060 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL18A1P39060 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC19.67■□□□□ 0.74
COL18A1P39060 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL18A1P39060 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC19.67■□□□□ 0.74
COL18A1P39060 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC19.67■□□□□ 0.74
COL18A1P39060 POLD4-208ENST00000532830 904 ntTSL 3 BASIC19.67■□□□□ 0.74
COL18A1P39060 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC19.67■□□□□ 0.74
COL18A1P39060 AC105137.3-201ENST00000617588 984 ntBASIC19.67■□□□□ 0.74
COL18A1P39060 AL161773.1-201ENST00000624845 863 ntBASIC19.67■□□□□ 0.74
COL18A1P39060 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.67■□□□□ 0.74
COL18A1P39060 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 IL9RP3-201ENST00000442856 1674 ntBASIC19.66■□□□□ 0.74
COL18A1P39060 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 BANF1P3-201ENST00000412556 261 ntBASIC19.66■□□□□ 0.74
COL18A1P39060 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC19.66■□□□□ 0.74
COL18A1P39060 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC19.66■□□□□ 0.74
COL18A1P39060 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC19.66■□□□□ 0.74
COL18A1P39060 AC141586.1-203ENST00000567242 366 ntBASIC19.66■□□□□ 0.74
COL18A1P39060 SIGLEC18P-201ENST00000602271 909 ntBASIC19.66■□□□□ 0.74
COL18A1P39060 AC107464.3-201ENST00000609172 737 ntBASIC19.66■□□□□ 0.74
COL18A1P39060 MIR6769A-201ENST00000617340 73 ntBASIC19.66■□□□□ 0.74
COL18A1P39060 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL18A1P39060 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC19.66■□□□□ 0.74
COL18A1P39060 MROH4P-201ENST00000431302 1578 ntBASIC19.65■□□□□ 0.74
COL18A1P39060 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL18A1P39060 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL18A1P39060 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC19.65■□□□□ 0.74
COL18A1P39060 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 HPGD-203ENST00000422112 805 ntTSL 2 BASIC19.65■□□□□ 0.74
COL18A1P39060 AL807761.2-201ENST00000422849 729 ntBASIC19.65■□□□□ 0.74
COL18A1P39060 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC19.65■□□□□ 0.74
COL18A1P39060 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC19.65■□□□□ 0.74
COL18A1P39060 AC079112.1-201ENST00000454972 939 ntBASIC19.65■□□□□ 0.74
COL18A1P39060 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC19.65■□□□□ 0.74
COL18A1P39060 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC19.65■□□□□ 0.74
COL18A1P39060 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC19.65■□□□□ 0.74
COL18A1P39060 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.65■□□□□ 0.74
COL18A1P39060 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC19.65■□□□□ 0.74
COL18A1P39060 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 AC090502.4-201ENST00000551714 1386 ntBASIC19.65■□□□□ 0.74
COL18A1P39060 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC19.65■□□□□ 0.74
COL18A1P39060 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 AC012362.1-201ENST00000434906 739 ntBASIC19.65■□□□□ 0.74
COL18A1P39060 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC19.65■□□□□ 0.74
COL18A1P39060 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL18A1P39060 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.65■□□□□ 0.74
COL18A1P39060 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC19.65■□□□□ 0.74
COL18A1P39060 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL18A1P39060 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.64■□□□□ 0.74
COL18A1P39060 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC19.64■□□□□ 0.74
COL18A1P39060 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL18A1P39060 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
COL18A1P39060 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
COL18A1P39060 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.64■□□□□ 0.73
COL18A1P39060 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.64■□□□□ 0.73
COL18A1P39060 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC19.64■□□□□ 0.73
COL18A1P39060 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
COL18A1P39060 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 145 ms