Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC11.99□□□□□ -0.49
CXCL1P09341 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC11.99□□□□□ -0.49
CXCL1P09341 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC11.99□□□□□ -0.49
CXCL1P09341 PCED1CP-201ENST00000419887 785 ntBASIC11.99□□□□□ -0.49
CXCL1P09341 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 MTRF1LP2-201ENST00000506027 1122 ntBASIC11.99□□□□□ -0.49
CXCL1P09341 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC11.99□□□□□ -0.49
CXCL1P09341 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 RNF151-202ENST00000569210 853 ntTSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 AL365330.1-201ENST00000607459 531 ntBASIC11.99□□□□□ -0.49
CXCL1P09341 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
CXCL1P09341 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 IER3-202ENST00000376377 1350 ntBASIC11.99□□□□□ -0.49
CXCL1P09341 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
CXCL1P09341 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 SLC9A3P3-201ENST00000457608 2229 ntBASIC11.99□□□□□ -0.49
CXCL1P09341 OS9-218ENST00000551035 2246 ntTSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC11.99□□□□□ -0.49
CXCL1P09341 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
CXCL1P09341 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
CXCL1P09341 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CXCL1P09341 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 AC131902.2-201ENST00000566892 2172 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 AC004899.2-201ENST00000622993 3860 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 CD99-202ENST00000381180 530 ntTSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC11.98□□□□□ -0.49
CXCL1P09341 ELK2BP-201ENST00000415014 1224 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 TMPOP1-202ENST00000424642 1267 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 LAGE3P1-201ENST00000425356 484 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC11.98□□□□□ -0.49
CXCL1P09341 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 MMP17-203ENST00000535004 719 ntTSL 3 BASIC11.98□□□□□ -0.49
CXCL1P09341 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC11.98□□□□□ -0.49
CXCL1P09341 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC11.98□□□□□ -0.49
CXCL1P09341 AC091076.1-201ENST00000610741 619 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 NPAP1P7-201ENST00000613027 823 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 AL355877.3-201ENST00000622820 899 ntBASIC11.98□□□□□ -0.49
CXCL1P09341 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
CXCL1P09341 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC11.98□□□□□ -0.49
CXCL1P09341 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms