Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 AP006294.1-201ENST00000415407 339 ntBASIC14.47□□□□□ -0.09
LDB3O75112 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.47□□□□□ -0.09
LDB3O75112 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.47□□□□□ -0.09
LDB3O75112 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.47□□□□□ -0.09
LDB3O75112 AC004066.1-201ENST00000502488 802 ntBASIC14.47□□□□□ -0.09
LDB3O75112 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.47□□□□□ -0.09
LDB3O75112 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.47□□□□□ -0.09
LDB3O75112 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.47□□□□□ -0.09
LDB3O75112 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.47□□□□□ -0.09
LDB3O75112 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.47□□□□□ -0.09
LDB3O75112 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.47□□□□□ -0.09
LDB3O75112 AC093813.1-201ENST00000605066 256 ntBASIC14.47□□□□□ -0.09
LDB3O75112 AL033527.5-201ENST00000641382 801 ntBASIC14.47□□□□□ -0.09
LDB3O75112 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LDB3O75112 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 KRT8P22-201ENST00000562317 1415 ntBASIC14.47□□□□□ -0.09
LDB3O75112 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.47□□□□□ -0.09
LDB3O75112 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LDB3O75112 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.46□□□□□ -0.09
LDB3O75112 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
LDB3O75112 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LDB3O75112 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
LDB3O75112 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.46□□□□□ -0.09
LDB3O75112 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 GHSR-202ENST00000427970 912 ntBASIC14.46□□□□□ -0.09
LDB3O75112 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.46□□□□□ -0.09
LDB3O75112 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.46□□□□□ -0.09
LDB3O75112 AP001582.1-201ENST00000525856 295 ntBASIC14.46□□□□□ -0.09
LDB3O75112 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.46□□□□□ -0.09
LDB3O75112 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.46□□□□□ -0.09
LDB3O75112 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.46□□□□□ -0.09
LDB3O75112 SAMD11P1-201ENST00000571429 661 ntBASIC14.46□□□□□ -0.09
LDB3O75112 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.46□□□□□ -0.09
LDB3O75112 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.46□□□□□ -0.09
LDB3O75112 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.46□□□□□ -0.09
LDB3O75112 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.46□□□□□ -0.09
LDB3O75112 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LDB3O75112 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.09
LDB3O75112 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.46□□□□□ -0.09
LDB3O75112 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 REXO1L4P-201ENST00000605109 1937 ntBASIC14.46□□□□□ -0.09
LDB3O75112 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDB3O75112 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
LDB3O75112 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
LDB3O75112 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
LDB3O75112 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
LDB3O75112 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.46□□□□□ -0.1
LDB3O75112 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
LDB3O75112 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
LDB3O75112 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
LDB3O75112 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms