Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 AC087499.5-201ENST00000452760 1342 ntBASIC12.5□□□□□ -0.41
FOXA2Q9Y261 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.5□□□□□ -0.41
FOXA2Q9Y261 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CICP11-201ENST00000434745 2827 ntBASIC12.5□□□□□ -0.41
FOXA2Q9Y261 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 AL590560.3-201ENST00000623350 461 ntBASIC12.49□□□□□ -0.41
FOXA2Q9Y261 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 AC023908.3-201ENST00000564211 3047 ntBASIC12.49□□□□□ -0.41
FOXA2Q9Y261 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 LINC00552-201ENST00000625151 2579 ntBASIC12.49□□□□□ -0.41
FOXA2Q9Y261 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 AC005089.1-201ENST00000619486 2241 ntBASIC12.49□□□□□ -0.41
FOXA2Q9Y261 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ACE3P-201ENST00000423435 1973 ntBASIC12.49□□□□□ -0.41
FOXA2Q9Y261 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA2Q9Y261 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
FOXA2Q9Y261 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms