Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 ALOX12P2-203ENST00000570921 1945 ntBASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 AL133267.1-201ENST00000398220 340 ntBASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 CYP46A4P-201ENST00000414953 267 ntBASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 AC018892.3-201ENST00000623986 2499 ntBASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 AC005052.1-201ENST00000625181 2492 ntBASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMD1Q9UGP4 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 RPS2P36-201ENST00000456516 831 ntBASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 GAPDHP40-201ENST00000505218 1006 ntBASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 MIR5572-201ENST00000583188 137 ntBASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 AC060766.1-201ENST00000590824 627 ntBASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 SPCS2P2-201ENST00000603270 608 ntBASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CU633904.3-201ENST00000624042 1029 ntBASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 AC128714.1-201ENST00000637035 887 ntBASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
LIMD1Q9UGP4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIMD1Q9UGP4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms