Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 AP002414.2-201ENST00000591780 3365 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 DRD5P1-201ENST00000456605 1438 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 RPS2P32-201ENST00000439199 892 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 KRT223P-202ENST00000449164 1292 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC119751.2-201ENST00000504529 210 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC026410.3-201ENST00000514280 936 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC009486.1-201ENST00000569860 813 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 MIR4259-201ENST00000584466 101 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC107373.2-201ENST00000607735 490 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC133552.6-201ENST00000613406 534 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC005252.2-201ENST00000624630 1141 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 AC112504.1-201ENST00000623415 1841 ntBASIC14.34□□□□□ -0.11
BEST3Q8N1M1 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
BEST3Q8N1M1 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.33□□□□□ -0.11
BEST3Q8N1M1 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 ANKRD19P-201ENST00000338192 862 ntBASIC14.33□□□□□ -0.12
BEST3Q8N1M1 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 AL355864.2-201ENST00000447420 863 ntBASIC14.33□□□□□ -0.12
BEST3Q8N1M1 AC104989.1-201ENST00000519711 778 ntBASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms