Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 AL353779.1-201ENST00000434793 351 ntBASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 RPL13AP25-201ENST00000484130 612 ntBASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 TERF1P3-201ENST00000505638 1227 ntBASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 AC099568.2-201ENST00000609194 695 ntBASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SYNE3Q6ZMZ3 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 AC023824.1-201ENST00000562945 2975 ntBASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.15■□□□□ 0.5
SYNE3Q6ZMZ3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SYNE3Q6ZMZ3 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SYNE3Q6ZMZ3 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SYNE3Q6ZMZ3 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
SYNE3Q6ZMZ3 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 MIR661-201ENST00000384842 89 ntBASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 PIN1P1-201ENST00000412108 996 ntBASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 AC093726.1-201ENST00000608064 963 ntBASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 AL645728.2-202ENST00000641679 227 ntBASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 CICP11-201ENST00000434745 2827 ntBASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SYNE3Q6ZMZ3 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SYNE3Q6ZMZ3 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.13■□□□□ 0.49
SYNE3Q6ZMZ3 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SYNE3Q6ZMZ3 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms