Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC124283.3-201ENST00000570869 594 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 NDUFV2P1-201ENST00000596415 907 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AP003419.4-201ENST00000616071 517 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AC091812.3-201ENST00000621362 345 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 DBET-201ENST00000630918 3363 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 INTS4P2-202ENST00000614726 2019 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 MAGEA5-201ENST00000446757 942 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 RN7SL818P-201ENST00000485099 259 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 RN7SL720P-201ENST00000488178 304 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 CLUHP6-201ENST00000580789 941 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 RN7SL725P-201ENST00000606439 259 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AL353726.2-201ENST00000623259 884 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 CU633904.3-201ENST00000624042 1029 ntBASIC14.86□□□□□ -0.03
COL28A1Q2UY09 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL28A1Q2UY09 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 KRT8P37-201ENST00000451609 1420 ntBASIC14.85□□□□□ -0.03
COL28A1Q2UY09 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 MTX1P1-201ENST00000440904 838 ntBASIC14.85□□□□□ -0.03
COL28A1Q2UY09 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.85□□□□□ -0.03
COL28A1Q2UY09 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms