Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.53□□□□□ -0.24
TFF3Q07654 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.24
TFF3Q07654 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.52□□□□□ -0.24
TFF3Q07654 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
TFF3Q07654 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.52□□□□□ -0.24
TFF3Q07654 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TFF3Q07654 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.52□□□□□ -0.24
TFF3Q07654 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
TFF3Q07654 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TFF3Q07654 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TFF3Q07654 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TFF3Q07654 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TFF3Q07654 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
TFF3Q07654 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
TFF3Q07654 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
TFF3Q07654 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 RNU1-114P-201ENST00000365297 166 ntBASIC13.52□□□□□ -0.25
TFF3Q07654 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
TFF3Q07654 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.52□□□□□ -0.25
TFF3Q07654 KLF2P2-201ENST00000416807 1039 ntBASIC13.52□□□□□ -0.25
TFF3Q07654 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 RN7SL48P-201ENST00000579283 293 ntBASIC13.52□□□□□ -0.25
TFF3Q07654 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
TFF3Q07654 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.52□□□□□ -0.25
TFF3Q07654 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.52□□□□□ -0.25
TFF3Q07654 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
TFF3Q07654 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 AC018735.1-201ENST00000437208 1502 ntBASIC13.52□□□□□ -0.25
TFF3Q07654 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.52□□□□□ -0.25
TFF3Q07654 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
TFF3Q07654 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.51□□□□□ -0.25
TFF3Q07654 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.51□□□□□ -0.25
TFF3Q07654 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 MTHFR-217ENST00000641820 1569 ntBASIC13.51□□□□□ -0.25
TFF3Q07654 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 MIR663B-201ENST00000408361 115 ntBASIC13.51□□□□□ -0.25
TFF3Q07654 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.51□□□□□ -0.25
TFF3Q07654 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
TFF3Q07654 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.51□□□□□ -0.25
TFF3Q07654 MIR4313-201ENST00000580760 101 ntBASIC13.51□□□□□ -0.25
TFF3Q07654 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 ECM1P1-201ENST00000604092 1279 ntBASIC13.51□□□□□ -0.25
TFF3Q07654 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
TFF3Q07654 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.51□□□□□ -0.25
TFF3Q07654 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms