Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
GABPAQ06546 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.9■□□□□ 0.46
GABPAQ06546 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.9■□□□□ 0.46
GABPAQ06546 AC006033.1-201ENST00000440505 426 ntBASIC17.9■□□□□ 0.46
GABPAQ06546 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 COX5BP1-201ENST00000507622 393 ntBASIC17.9■□□□□ 0.46
GABPAQ06546 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.9■□□□□ 0.46
GABPAQ06546 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.9■□□□□ 0.46
GABPAQ06546 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.9■□□□□ 0.46
GABPAQ06546 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.9■□□□□ 0.46
GABPAQ06546 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
GABPAQ06546 OR10B1P-201ENST00000601666 907 ntBASIC17.9■□□□□ 0.46
GABPAQ06546 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.9■□□□□ 0.46
GABPAQ06546 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.9■□□□□ 0.46
GABPAQ06546 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
GABPAQ06546 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 AC087481.3-201ENST00000602886 1894 ntBASIC17.9■□□□□ 0.46
GABPAQ06546 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.9■□□□□ 0.46
GABPAQ06546 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
GABPAQ06546 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
GABPAQ06546 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
GABPAQ06546 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
GABPAQ06546 AC012508.2-201ENST00000567613 1472 ntBASIC17.89■□□□□ 0.45
GABPAQ06546 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.89■□□□□ 0.45
GABPAQ06546 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 MIR1247-201ENST00000408206 136 ntBASIC17.89■□□□□ 0.45
GABPAQ06546 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 BTBD6P1-201ENST00000412176 1267 ntBASIC17.89■□□□□ 0.45
GABPAQ06546 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 MTX1P1-201ENST00000440904 838 ntBASIC17.89■□□□□ 0.45
GABPAQ06546 CHMP1AP1-201ENST00000445563 662 ntBASIC17.89■□□□□ 0.45
GABPAQ06546 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.89■□□□□ 0.45
GABPAQ06546 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.89■□□□□ 0.45
GABPAQ06546 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
GABPAQ06546 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
GABPAQ06546 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 AC244093.1-201ENST00000610837 814 ntBASIC17.89■□□□□ 0.45
GABPAQ06546 AL096828.3-201ENST00000615354 462 ntBASIC17.89■□□□□ 0.45
GABPAQ06546 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.89■□□□□ 0.45
GABPAQ06546 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
GABPAQ06546 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.89■□□□□ 0.45
GABPAQ06546 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.89■□□□□ 0.45
GABPAQ06546 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 AL137783.1-201ENST00000623494 1896 ntBASIC17.88■□□□□ 0.45
GABPAQ06546 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
GABPAQ06546 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.88■□□□□ 0.45
GABPAQ06546 C18orf15-201ENST00000623680 2534 ntBASIC17.88■□□□□ 0.45
GABPAQ06546 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
GABPAQ06546 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.88■□□□□ 0.45
GABPAQ06546 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
GABPAQ06546 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
GABPAQ06546 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.88■□□□□ 0.45
GABPAQ06546 GPAA1P2-201ENST00000417923 928 ntBASIC17.88■□□□□ 0.45
GABPAQ06546 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.88■□□□□ 0.45
GABPAQ06546 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.88■□□□□ 0.45
GABPAQ06546 HSPB1P2-201ENST00000448722 546 ntBASIC17.88■□□□□ 0.45
GABPAQ06546 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
GABPAQ06546 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.88■□□□□ 0.45
GABPAQ06546 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.88■□□□□ 0.45
GABPAQ06546 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
GABPAQ06546 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms