Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.07■□□□□ 0.16
COL4A4P53420 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.07■□□□□ 0.16
COL4A4P53420 NDUFS6P1-201ENST00000485187 316 ntBASIC16.07■□□□□ 0.16
COL4A4P53420 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 AC002472.3-201ENST00000640124 621 ntBASIC16.07■□□□□ 0.16
COL4A4P53420 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL4A4P53420 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.07■□□□□ 0.16
COL4A4P53420 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A4P53420 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A4P53420 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A4P53420 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.06■□□□□ 0.16
COL4A4P53420 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A4P53420 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 VDAC1P1-201ENST00000439229 848 ntBASIC16.06■□□□□ 0.16
COL4A4P53420 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.06■□□□□ 0.16
COL4A4P53420 DUX4L47-201ENST00000566374 394 ntBASIC16.06■□□□□ 0.16
COL4A4P53420 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.06■□□□□ 0.16
COL4A4P53420 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.06■□□□□ 0.16
COL4A4P53420 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A4P53420 AL139384.1-201ENST00000612143 3047 ntBASIC16.06■□□□□ 0.16
COL4A4P53420 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.06■□□□□ 0.16
COL4A4P53420 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A4P53420 AC092384.3-202ENST00000564646 2873 ntBASIC16.06■□□□□ 0.16
COL4A4P53420 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 KRT8P21-201ENST00000430398 1491 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 OR2K2-202ENST00000374428 1038 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
COL4A4P53420 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 AC079112.1-201ENST00000454972 939 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.05■□□□□ 0.16
COL4A4P53420 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC16.05■□□□□ 0.16
COL4A4P53420 AL132994.2-201ENST00000603120 687 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
COL4A4P53420 AL136301.1-201ENST00000615830 422 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 AC103691.2-201ENST00000618824 433 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 NAP1L6-202ENST00000641404 1222 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 AP000593.2-201ENST00000542775 1433 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 AC126177.1-201ENST00000547829 2218 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 SHC1P1-201ENST00000425230 1745 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms