Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC104794.3-201ENST00000566840 1248 ntBASIC15□□□□□ -0.01
HNF4AP41235 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15□□□□□ -0.01
HNF4AP41235 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15□□□□□ -0.01
HNF4AP41235 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 AL121723.1-201ENST00000445194 1519 ntBASIC15□□□□□ -0.01
HNF4AP41235 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15□□□□□ -0.01
HNF4AP41235 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 GOLGA8DP-202ENST00000341390 2184 ntBASIC15□□□□□ -0.01
HNF4AP41235 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 WASH3P-207ENST00000560956 1394 ntBASIC14.99□□□□□ -0.01
HNF4AP41235 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HNF4AP41235 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.99□□□□□ -0.01
HNF4AP41235 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HNF4AP41235 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.99□□□□□ -0.01
HNF4AP41235 GHSR-202ENST00000427970 912 ntBASIC14.99□□□□□ -0.01
HNF4AP41235 AC114501.2-201ENST00000439631 535 ntBASIC14.99□□□□□ -0.01
HNF4AP41235 AL589987.1-201ENST00000453380 819 ntBASIC14.99□□□□□ -0.01
HNF4AP41235 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.99□□□□□ -0.01
HNF4AP41235 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HNF4AP41235 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.99□□□□□ -0.01
HNF4AP41235 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.99□□□□□ -0.01
HNF4AP41235 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.99□□□□□ -0.01
HNF4AP41235 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HNF4AP41235 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.99□□□□□ -0.01
HNF4AP41235 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
HNF4AP41235 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HNF4AP41235 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.98□□□□□ -0.01
HNF4AP41235 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HNF4AP41235 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 AC091951.1-201ENST00000512854 2465 ntBASIC14.98□□□□□ -0.01
HNF4AP41235 AGAP7P-201ENST00000582299 2062 ntBASIC14.98□□□□□ -0.01
HNF4AP41235 AGAP14-201ENST00000624701 2060 ntBASIC14.98□□□□□ -0.01
HNF4AP41235 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
HNF4AP41235 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 BCRP1-201ENST00000444246 691 ntBASIC14.98□□□□□ -0.01
HNF4AP41235 TSPY16P-201ENST00000449843 468 ntBASIC14.98□□□□□ -0.01
HNF4AP41235 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.98□□□□□ -0.01
HNF4AP41235 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.98□□□□□ -0.01
HNF4AP41235 AC092337.1-201ENST00000568699 1129 ntBASIC14.98□□□□□ -0.01
HNF4AP41235 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
HNF4AP41235 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms