Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 AP005117.1-202ENST00000581724 1908 ntBASIC18.82■□□□□ 0.6
COL5A3P25940 AL139384.1-201ENST00000612143 3047 ntBASIC18.82■□□□□ 0.6
COL5A3P25940 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.82■□□□□ 0.6
COL5A3P25940 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.82■□□□□ 0.6
COL5A3P25940 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL5A3P25940 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.82■□□□□ 0.6
COL5A3P25940 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 PIN4P1-201ENST00000451079 396 ntBASIC18.82■□□□□ 0.6
COL5A3P25940 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.82■□□□□ 0.6
COL5A3P25940 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.82■□□□□ 0.6
COL5A3P25940 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.82■□□□□ 0.6
COL5A3P25940 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.82■□□□□ 0.6
COL5A3P25940 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC18.82■□□□□ 0.6
COL5A3P25940 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC18.82■□□□□ 0.6
COL5A3P25940 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL5A3P25940 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.81■□□□□ 0.6
COL5A3P25940 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.81■□□□□ 0.6
COL5A3P25940 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18.81■□□□□ 0.6
COL5A3P25940 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 AL357563.1-201ENST00000404728 395 ntBASIC18.81■□□□□ 0.6
COL5A3P25940 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 AC026410.1-201ENST00000507366 1101 ntBASIC18.81■□□□□ 0.6
COL5A3P25940 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.81■□□□□ 0.6
COL5A3P25940 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.81■□□□□ 0.6
COL5A3P25940 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 AC027601.3-201ENST00000622907 509 ntBASIC18.81■□□□□ 0.6
COL5A3P25940 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL5A3P25940 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 AC007292.2-201ENST00000593524 1812 ntBASIC18.81■□□□□ 0.6
COL5A3P25940 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COL5A3P25940 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.81■□□□□ 0.6
COL5A3P25940 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL5A3P25940 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.81■□□□□ 0.6
COL5A3P25940 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC18.8■□□□□ 0.6
COL5A3P25940 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL5A3P25940 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.8■□□□□ 0.6
COL5A3P25940 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC18.8■□□□□ 0.6
COL5A3P25940 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC18.8■□□□□ 0.6
COL5A3P25940 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.8■□□□□ 0.6
COL5A3P25940 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.8■□□□□ 0.6
COL5A3P25940 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.8■□□□□ 0.6
COL5A3P25940 MIR6858-201ENST00000620733 67 ntBASIC18.8■□□□□ 0.6
COL5A3P25940 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.8■□□□□ 0.6
COL5A3P25940 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 AC090502.4-201ENST00000551714 1386 ntBASIC18.8■□□□□ 0.6
COL5A3P25940 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL5A3P25940 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 TSPY25P-201ENST00000429463 745 ntBASIC18.8■□□□□ 0.6
COL5A3P25940 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC18.8■□□□□ 0.6
COL5A3P25940 RPSAP15-201ENST00000448168 861 ntBASIC18.8■□□□□ 0.6
COL5A3P25940 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.8■□□□□ 0.6
COL5A3P25940 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL5A3P25940 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL5A3P25940 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC18.79■□□□□ 0.6
COL5A3P25940 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COL5A3P25940 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 AL513523.2-202ENST00000427283 2040 ntBASIC18.79■□□□□ 0.6
COL5A3P25940 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC18.79■□□□□ 0.6
COL5A3P25940 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 REXO1L2P-201ENST00000425429 2069 ntBASIC18.79■□□□□ 0.6
COL5A3P25940 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 RPL7P35-201ENST00000446943 740 ntBASIC18.79■□□□□ 0.6
COL5A3P25940 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 AC107464.3-201ENST00000609172 737 ntBASIC18.79■□□□□ 0.6
COL5A3P25940 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms