Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 MARK2P16-201ENST00000605714 1723 ntBASIC11.65□□□□□ -0.54
COL6A5A8TX70 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AL512306.1-201ENST00000432698 848 ntBASIC11.65□□□□□ -0.54
COL6A5A8TX70 NME6-208ENST00000435684 599 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC226150.1-201ENST00000544259 466 ntBASIC11.65□□□□□ -0.54
COL6A5A8TX70 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC080013.5-201ENST00000607044 679 ntBASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC002044.2-201ENST00000624910 970 ntBASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC110057.1-201ENST00000636031 898 ntBASIC11.65□□□□□ -0.54
COL6A5A8TX70 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CASP2-203ENST00000392925 616 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 USB1-205ENST00000561743 1135 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC11.65□□□□□ -0.54
COL6A5A8TX70 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
COL6A5A8TX70 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
COL6A5A8TX70 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
COL6A5A8TX70 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC11.65□□□□□ -0.55
COL6A5A8TX70 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
COL6A5A8TX70 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
COL6A5A8TX70 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
COL6A5A8TX70 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
COL6A5A8TX70 ZNF436-AS1-201ENST00000335648 2547 ntBASIC11.65□□□□□ -0.55
COL6A5A8TX70 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 RBPMSLP-201ENST00000433427 502 ntBASIC11.64□□□□□ -0.55
COL6A5A8TX70 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 BCRP4-201ENST00000506079 804 ntBASIC11.64□□□□□ -0.55
COL6A5A8TX70 RNA5SP417-201ENST00000516459 108 ntBASIC11.64□□□□□ -0.55
COL6A5A8TX70 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 DUX4L47-201ENST00000566374 394 ntBASIC11.64□□□□□ -0.55
COL6A5A8TX70 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 BAX-205ENST00000391871 687 ntTSL 5 BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms