Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 AC104073.2-201ENST00000453737 312 ntBASIC19.31■□□□□ 0.68
SCN11AQ9UI33 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 SALL4P5-201ENST00000419001 1760 ntBASIC19.31■□□□□ 0.68
SCN11AQ9UI33 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN11AQ9UI33 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 WASH3P-207ENST00000560956 1394 ntBASIC19.3■□□□□ 0.68
SCN11AQ9UI33 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 CICP12-201ENST00000455801 843 ntBASIC19.3■□□□□ 0.68
SCN11AQ9UI33 RN7SL181P-201ENST00000462921 277 ntBASIC19.3■□□□□ 0.68
SCN11AQ9UI33 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 AC008825.2-201ENST00000603374 718 ntBASIC19.3■□□□□ 0.68
SCN11AQ9UI33 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 PRAL-201ENST00000624952 3286 ntBASIC19.3■□□□□ 0.68
SCN11AQ9UI33 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.3■□□□□ 0.68
SCN11AQ9UI33 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN11AQ9UI33 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 MIR6720-201ENST00000611664 98 ntBASIC19.29■□□□□ 0.68
SCN11AQ9UI33 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 SSR4P1-203ENST00000599569 2260 ntBASIC19.29■□□□□ 0.68
SCN11AQ9UI33 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 HNRNPA1P41-201ENST00000397777 928 ntBASIC19.29■□□□□ 0.68
SCN11AQ9UI33 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN11AQ9UI33 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN11AQ9UI33 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms