Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
MMP28Q9H239 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
MMP28Q9H239 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
MMP28Q9H239 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.71□□□□□ -0.21
MMP28Q9H239 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.71□□□□□ -0.21
MMP28Q9H239 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
MMP28Q9H239 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 FAM185BP-201ENST00000443595 716 ntBASIC13.71□□□□□ -0.21
MMP28Q9H239 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.71□□□□□ -0.21
MMP28Q9H239 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 AC087641.1-201ENST00000557561 1021 ntBASIC13.71□□□□□ -0.21
MMP28Q9H239 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.71□□□□□ -0.21
MMP28Q9H239 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 CYP2A7P1-201ENST00000595391 815 ntBASIC13.71□□□□□ -0.21
MMP28Q9H239 FAM197Y3-203ENST00000618346 717 ntBASIC13.71□□□□□ -0.21
MMP28Q9H239 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.71□□□□□ -0.21
MMP28Q9H239 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 U82695.1-201ENST00000635752 1889 ntBASIC13.71□□□□□ -0.21
MMP28Q9H239 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MMP28Q9H239 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.71□□□□□ -0.21
MMP28Q9H239 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.71□□□□□ -0.21
MMP28Q9H239 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.71□□□□□ -0.22
MMP28Q9H239 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
MMP28Q9H239 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.71□□□□□ -0.22
MMP28Q9H239 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
MMP28Q9H239 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MMP28Q9H239 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
MMP28Q9H239 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.71□□□□□ -0.22
MMP28Q9H239 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.71□□□□□ -0.22
MMP28Q9H239 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
MMP28Q9H239 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.71□□□□□ -0.22
MMP28Q9H239 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.71□□□□□ -0.22
MMP28Q9H239 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.71□□□□□ -0.22
MMP28Q9H239 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 AL359881.3-201ENST00000602640 1721 ntBASIC13.7□□□□□ -0.22
MMP28Q9H239 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms