Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.4■□□□□ 0.54
SNED1Q8TER0 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.4■□□□□ 0.54
SNED1Q8TER0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SNED1Q8TER0 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.4■□□□□ 0.54
SNED1Q8TER0 AC135983.4-201ENST00000564116 1262 ntBASIC18.4■□□□□ 0.54
SNED1Q8TER0 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.4■□□□□ 0.54
SNED1Q8TER0 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SNED1Q8TER0 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNED1Q8TER0 AC092171.5-201ENST00000608012 942 ntBASIC18.4■□□□□ 0.54
SNED1Q8TER0 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.4■□□□□ 0.54
SNED1Q8TER0 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNED1Q8TER0 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNED1Q8TER0 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.4■□□□□ 0.54
SNED1Q8TER0 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.39■□□□□ 0.53
SNED1Q8TER0 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 DOC2GP-204ENST00000639052 2548 ntBASIC18.39■□□□□ 0.53
SNED1Q8TER0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 OR2K2-202ENST00000374428 1038 ntBASIC18.39■□□□□ 0.53
SNED1Q8TER0 RPL5P21-201ENST00000404620 815 ntBASIC18.39■□□□□ 0.53
SNED1Q8TER0 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 AC078875.1-201ENST00000431907 724 ntBASIC18.39■□□□□ 0.53
SNED1Q8TER0 IGLV3-15-201ENST00000518356 244 ntBASIC18.39■□□□□ 0.53
SNED1Q8TER0 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 MIR6842-201ENST00000612539 65 ntBASIC18.39■□□□□ 0.53
SNED1Q8TER0 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SNED1Q8TER0 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNED1Q8TER0 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 AL138725.1-201ENST00000407347 1314 ntBASIC18.38■□□□□ 0.53
SNED1Q8TER0 AL008718.2-201ENST00000609206 1313 ntBASIC18.38■□□□□ 0.53
SNED1Q8TER0 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 AC078991.1-201ENST00000437297 610 ntBASIC18.38■□□□□ 0.53
SNED1Q8TER0 FAM58BP-201ENST00000439056 645 ntBASIC18.38■□□□□ 0.53
SNED1Q8TER0 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 NDUFS6P1-201ENST00000485187 316 ntBASIC18.38■□□□□ 0.53
SNED1Q8TER0 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 AC090857.1-201ENST00000527400 390 ntBASIC18.38■□□□□ 0.53
SNED1Q8TER0 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 HLA-C-210ENST00000640219 976 ntBASIC18.38■□□□□ 0.53
SNED1Q8TER0 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.38■□□□□ 0.53
SNED1Q8TER0 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNED1Q8TER0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNED1Q8TER0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SNED1Q8TER0 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.37■□□□□ 0.53
SNED1Q8TER0 TBC1D3J-201ENST00000620719 1426 ntBASIC18.37■□□□□ 0.53
SNED1Q8TER0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.37■□□□□ 0.53
SNED1Q8TER0 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.37■□□□□ 0.53
SNED1Q8TER0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNED1Q8TER0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SNED1Q8TER0 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNED1Q8TER0 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNED1Q8TER0 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms