Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 NDUFAB1P1-201ENST00000404262 460 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 SERF2-206ENST00000409291 807 ntTSL 3 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AC012441.2-201ENST00000444843 739 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 ALG3P1-201ENST00000508806 1114 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AC009884.2-201ENST00000603110 324 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AC006158.1-201ENST00000610661 249 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AL583805.1-201ENST00000391389 531 ntBASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 OR2R1P-201ENST00000441404 914 ntBASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 PPOX-204ENST00000462866 473 ntTSL 5 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AC009145.4-201ENST00000625119 1294 ntBASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AC003686.1-201ENST00000550956 1034 ntBASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 RPL8P2-201ENST00000430538 502 ntBASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 AGPAT5P1-201ENST00000455855 1019 ntBASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 POU5F1P2-201ENST00000521750 823 ntBASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
VPS13DQ5THJ4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 LYPLA2P1-203ENST00000447689 696 ntBASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 AC090857.1-201ENST00000527400 390 ntBASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 AC107464.3-201ENST00000609172 737 ntBASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 HNRNPA1P27-201ENST00000412087 955 ntBASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 POLD4-208ENST00000532830 904 ntTSL 3 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
VPS13DQ5THJ4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms