Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC10.74□□□□□ -0.69
PRKDCP78527 AL139384.1-201ENST00000612143 3047 ntBASIC10.74□□□□□ -0.69
PRKDCP78527 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC10.74□□□□□ -0.69
PRKDCP78527 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 CELP-201ENST00000411440 1249 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 KRT18P36-201ENST00000411618 1276 ntBASIC10.74□□□□□ -0.69
PRKDCP78527 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 TPT1P6-201ENST00000458298 514 ntBASIC10.74□□□□□ -0.69
PRKDCP78527 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC10.74□□□□□ -0.69
PRKDCP78527 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC10.74□□□□□ -0.69
PRKDCP78527 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
PRKDCP78527 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC10.74□□□□□ -0.69
PRKDCP78527 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC10.74□□□□□ -0.69
PRKDCP78527 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC10.74□□□□□ -0.69
PRKDCP78527 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC10.74□□□□□ -0.69
PRKDCP78527 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 AC021305.1-201ENST00000520656 1514 ntBASIC10.74□□□□□ -0.69
PRKDCP78527 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC10.74□□□□□ -0.69
PRKDCP78527 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC10.74□□□□□ -0.69
PRKDCP78527 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC10.74□□□□□ -0.69
PRKDCP78527 RHOQP2-201ENST00000449922 579 ntBASIC10.74□□□□□ -0.69
PRKDCP78527 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC10.74□□□□□ -0.69
PRKDCP78527 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
PRKDCP78527 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
PRKDCP78527 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 RNVU1-8-201ENST00000364272 125 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 AC092580.1-201ENST00000433998 658 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 PFN2-205ENST00000461868 613 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC10.73□□□□□ -0.69
PRKDCP78527 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 MT2A-202ENST00000561491 581 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 OLA1P2-201ENST00000395519 1264 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC10.73□□□□□ -0.69
PRKDCP78527 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC10.73□□□□□ -0.69
PRKDCP78527 KRT18P37-201ENST00000520711 1282 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC10.73□□□□□ -0.69
PRKDCP78527 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC10.73□□□□□ -0.69
PRKDCP78527 DERL2-206ENST00000572834 589 ntTSL 3 BASIC10.73□□□□□ -0.69
PRKDCP78527 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC10.73□□□□□ -0.69
PRKDCP78527 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC10.73□□□□□ -0.69
PRKDCP78527 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
PRKDCP78527 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
PRKDCP78527 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC10.73□□□□□ -0.69
PRKDCP78527 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC10.73□□□□□ -0.69
PRKDCP78527 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC10.73□□□□□ -0.69
PRKDCP78527 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 AC006529.1-201ENST00000459978 637 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 CDC23-208ENST00000505120 455 ntTSL 3 BASIC10.73□□□□□ -0.69
PRKDCP78527 AC114947.1-202ENST00000514136 344 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
PRKDCP78527 IGHEP2-201ENST00000519308 1256 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC10.73□□□□□ -0.69
PRKDCP78527 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC10.73□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms