Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 AL050341.2-201ENST00000567508 1541 ntBASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC15.17■□□□□ 0.02
COL25A1Q9BXS0 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 AC092910.2-201ENST00000491262 348 ntBASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 SEPHS2P1-201ENST00000511618 1162 ntBASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 MBP-230ENST00000528160 584 ntTSL 5 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 MST1L-204ENST00000545160 559 ntTSL 4 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 AC013553.1-201ENST00000560906 267 ntBASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 AC008825.2-201ENST00000603374 718 ntBASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL25A1Q9BXS0 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 AL512599.1-201ENST00000430724 685 ntBASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 IFNWP2-201ENST00000431203 580 ntBASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 ACY3-202ENST00000529256 933 ntTSL 3 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 AC004801.1-201ENST00000549557 360 ntBASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.15■□□□□ 0.02
COL25A1Q9BXS0 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.14■□□□□ 0.01
COL25A1Q9BXS0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.14■□□□□ 0.01
COL25A1Q9BXS0 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
COL25A1Q9BXS0 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL25A1Q9BXS0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL25A1Q9BXS0 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.14■□□□□ 0.01
COL25A1Q9BXS0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms