Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 AC025181.2-201ENST00000606994 802 ntBASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 AC087481.3-201ENST00000602886 1894 ntBASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PTCHD1Q96NR3 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 C1QBPP1-201ENST00000400117 770 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 COX5BP8-201ENST00000416911 349 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 KRT17P7-201ENST00000451704 1104 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 INE1-201ENST00000456273 945 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 AC120045.2-201ENST00000567334 178 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 AL035252.4-201ENST00000624174 288 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 DRD5P1-201ENST00000456605 1438 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 KRT8P22-201ENST00000562317 1415 ntBASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PTCHD1Q96NR3 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms