Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 AC099398.1-201ENST00000567919 2776 ntBASIC20.57■□□□□ 0.88
NPHP3Q7Z494 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 RPL8P2-201ENST00000430538 502 ntBASIC20.56■□□□□ 0.88
NPHP3Q7Z494 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 AL109837.1-201ENST00000603272 613 ntBASIC20.56■□□□□ 0.88
NPHP3Q7Z494 AC008825.2-201ENST00000603374 718 ntBASIC20.56■□□□□ 0.88
NPHP3Q7Z494 MEG3_2.1-201ENST00000611456 105 ntBASIC20.56■□□□□ 0.88
NPHP3Q7Z494 Z98259.2-201ENST00000641583 609 ntBASIC20.56■□□□□ 0.88
NPHP3Q7Z494 AC011840.2-201ENST00000563063 1520 ntBASIC20.56■□□□□ 0.88
NPHP3Q7Z494 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 AD000864.1-201ENST00000624076 2295 ntBASIC20.56■□□□□ 0.88
NPHP3Q7Z494 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP3Q7Z494 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 MIR1227-201ENST00000408484 88 ntBASIC20.55■□□□□ 0.88
NPHP3Q7Z494 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 NAGK-204ENST00000443872 878 ntTSL 3 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 AC005632.3-201ENST00000605544 308 ntBASIC20.55■□□□□ 0.88
NPHP3Q7Z494 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NPHP3Q7Z494 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms