Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC25.14■■□□□ 1.61
CUX1P39880 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC25.14■■□□□ 1.61
CUX1P39880 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CUX1P39880 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CUX1P39880 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CUX1P39880 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CUX1P39880 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC25.13■■□□□ 1.61
CUX1P39880 RBM8B-201ENST00000555532 525 ntBASIC25.13■■□□□ 1.61
CUX1P39880 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC25.13■■□□□ 1.61
CUX1P39880 AC009884.2-201ENST00000603110 324 ntBASIC25.13■■□□□ 1.61
CUX1P39880 AC084781.1-201ENST00000613737 656 ntBASIC25.13■■□□□ 1.61
CUX1P39880 AC005618.3-201ENST00000624928 458 ntBASIC25.13■■□□□ 1.61
CUX1P39880 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC25.13■■□□□ 1.61
CUX1P39880 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
CUX1P39880 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC25.13■■□□□ 1.61
CUX1P39880 AC015909.3-201ENST00000572855 1794 ntBASIC25.13■■□□□ 1.61
CUX1P39880 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC25.13■■□□□ 1.61
CUX1P39880 AL139384.1-201ENST00000612143 3047 ntBASIC25.13■■□□□ 1.61
CUX1P39880 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CUX1P39880 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC25.12■■□□□ 1.61
CUX1P39880 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC25.12■■□□□ 1.61
CUX1P39880 OR2R1P-201ENST00000441404 914 ntBASIC25.12■■□□□ 1.61
CUX1P39880 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC25.12■■□□□ 1.61
CUX1P39880 AC133540.1-201ENST00000620845 1019 ntBASIC25.12■■□□□ 1.61
CUX1P39880 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 AC090616.6-203ENST00000579186 1945 ntBASIC25.12■■□□□ 1.61
CUX1P39880 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 RNA5SP359-201ENST00000364838 113 ntBASIC25.12■■□□□ 1.61
CUX1P39880 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC25.12■■□□□ 1.61
CUX1P39880 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC25.12■■□□□ 1.61
CUX1P39880 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 AL031713.1-201ENST00000564813 661 ntBASIC25.12■■□□□ 1.61
CUX1P39880 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX1P39880 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC25.11■■□□□ 1.61
CUX1P39880 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CUX1P39880 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX1P39880 KRT8P31-201ENST00000504812 1408 ntBASIC25.11■■□□□ 1.61
CUX1P39880 LILRP1-201ENST00000444199 1370 ntBASIC25.11■■□□□ 1.61
CUX1P39880 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX1P39880 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC25.11■■□□□ 1.61
CUX1P39880 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX1P39880 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC25.11■■□□□ 1.61
CUX1P39880 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX1P39880 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX1P39880 XBP1P1-201ENST00000436573 652 ntBASIC25.11■■□□□ 1.61
CUX1P39880 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC25.11■■□□□ 1.61
CUX1P39880 AC103810.10-201ENST00000606504 343 ntBASIC25.11■■□□□ 1.61
CUX1P39880 BX088702.1-201ENST00000610784 235 ntBASIC25.11■■□□□ 1.61
CUX1P39880 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CUX1P39880 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX1P39880 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
CUX1P39880 CYP51A1P3-201ENST00000400072 1428 ntBASIC25.1■■□□□ 1.61
CUX1P39880 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
CUX1P39880 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX1P39880 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC25.1■■□□□ 1.61
CUX1P39880 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX1P39880 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 RAN-210ENST00000541630 1475 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX1P39880 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC25.1■■□□□ 1.61
CUX1P39880 AP000358.1-201ENST00000456260 156 ntBASIC25.1■■□□□ 1.61
CUX1P39880 AC130709.1-201ENST00000484779 1212 ntBASIC25.1■■□□□ 1.61
CUX1P39880 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC25.1■■□□□ 1.61
CUX1P39880 NAT9-220ENST00000582870 896 ntTSL 5 BASIC25.1■■□□□ 1.61
CUX1P39880 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC25.1■■□□□ 1.61
CUX1P39880 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC25.1■■□□□ 1.61
CUX1P39880 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 AC127024.7-201ENST00000625101 200 ntBASIC25.1■■□□□ 1.61
CUX1P39880 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
CUX1P39880 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX1P39880 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX1P39880 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms