Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20■□□□□ 0.79
COL3A1P02461 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL3A1P02461 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
COL3A1P02461 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
COL3A1P02461 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
COL3A1P02461 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC20■□□□□ 0.79
COL3A1P02461 AC100850.1-201ENST00000506768 649 ntBASIC20■□□□□ 0.79
COL3A1P02461 ALG3P1-201ENST00000508806 1114 ntBASIC20■□□□□ 0.79
COL3A1P02461 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC20■□□□□ 0.79
COL3A1P02461 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC20■□□□□ 0.79
COL3A1P02461 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20■□□□□ 0.79
COL3A1P02461 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC20■□□□□ 0.79
COL3A1P02461 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20■□□□□ 0.79
COL3A1P02461 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC20■□□□□ 0.79
COL3A1P02461 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC20■□□□□ 0.79
COL3A1P02461 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 TCAF2P1-201ENST00000291129 2421 ntBASIC20■□□□□ 0.79
COL3A1P02461 HARS-202ENST00000415192 1401 ntTSL 2 BASIC20■□□□□ 0.79
COL3A1P02461 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
COL3A1P02461 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL3A1P02461 AC015818.8-201ENST00000587907 1519 ntBASIC20■□□□□ 0.79
COL3A1P02461 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
COL3A1P02461 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL3A1P02461 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
COL3A1P02461 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 AC099548.2-209ENST00000480264 625 ntBASIC19.99■□□□□ 0.79
COL3A1P02461 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 AC002472.3-201ENST00000640124 621 ntBASIC19.99■□□□□ 0.79
COL3A1P02461 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC19.99■□□□□ 0.79
COL3A1P02461 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
COL3A1P02461 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.99■□□□□ 0.79
COL3A1P02461 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
COL3A1P02461 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.99■□□□□ 0.79
COL3A1P02461 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
COL3A1P02461 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC19.99■□□□□ 0.79
COL3A1P02461 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.99■□□□□ 0.79
COL3A1P02461 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
COL3A1P02461 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL3A1P02461 AL008638.5-201ENST00000623814 1298 ntBASIC19.99■□□□□ 0.79
COL3A1P02461 AL590440.2-201ENST00000641973 1595 ntBASIC19.99■□□□□ 0.79
COL3A1P02461 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
COL3A1P02461 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 AJ011931.1-201ENST00000618749 2492 ntBASIC19.98■□□□□ 0.79
COL3A1P02461 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC19.98■□□□□ 0.79
COL3A1P02461 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.98■□□□□ 0.79
COL3A1P02461 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL3A1P02461 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.98■□□□□ 0.79
COL3A1P02461 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.98■□□□□ 0.79
COL3A1P02461 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.98■□□□□ 0.79
COL3A1P02461 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.98■□□□□ 0.79
COL3A1P02461 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.98■□□□□ 0.79
COL3A1P02461 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.98■□□□□ 0.79
COL3A1P02461 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.98■□□□□ 0.79
COL3A1P02461 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC19.98■□□□□ 0.79
COL3A1P02461 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.98■□□□□ 0.79
COL3A1P02461 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL3A1P02461 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
COL3A1P02461 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms