Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 RRP7BP-205ENST00000566851 833 ntBASIC17.81■□□□□ 0.44
CTDNEP1O95476 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 AC140479.7-201ENST00000636301 2332 ntBASIC17.81■□□□□ 0.44
CTDNEP1O95476 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 BCRP1-201ENST00000444246 691 ntBASIC17.8■□□□□ 0.44
CTDNEP1O95476 TSPY16P-201ENST00000449843 468 ntBASIC17.8■□□□□ 0.44
CTDNEP1O95476 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 AC093004.1-201ENST00000508850 424 ntBASIC17.8■□□□□ 0.44
CTDNEP1O95476 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 AJ011932.1-201ENST00000621707 465 ntBASIC17.8■□□□□ 0.44
CTDNEP1O95476 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTDNEP1O95476 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CTDNEP1O95476 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC055876.2-201ENST00000531834 546 ntBASIC17.79■□□□□ 0.44
CTDNEP1O95476 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC124283.3-201ENST00000570869 594 ntBASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 RN7SL204P-201ENST00000582831 262 ntBASIC17.79■□□□□ 0.44
CTDNEP1O95476 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC007292.2-201ENST00000593524 1812 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms