Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC21.12■□□□□ 0.97
NPHP4O75161 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
NPHP4O75161 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP4O75161 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
NPHP4O75161 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
NPHP4O75161 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NPHP4O75161 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP4O75161 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 AC127383.1-201ENST00000444697 1800 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NPHP4O75161 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 AL357373.1-201ENST00000394974 322 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP4O75161 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP4O75161 AQP7P5-201ENST00000428759 1049 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC21.11■□□□□ 0.97
NPHP4O75161 AQP7P4-201ENST00000447083 1042 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 AQP7P2-201ENST00000453967 1041 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP4O75161 AC012073.1-201ENST00000606114 1108 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 AQP7P3-201ENST00000624547 1041 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP4O75161 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 AL137783.1-201ENST00000623494 1896 ntBASIC21.11■□□□□ 0.97
NPHP4O75161 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP4O75161 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP4O75161 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP4O75161 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP4O75161 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP4O75161 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP4O75161 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP4O75161 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP4O75161 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP4O75161 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP4O75161 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NPHP4O75161 AC006449.5-201ENST00000610658 2098 ntBASIC21.1■□□□□ 0.97
NPHP4O75161 ILF3-AS1-201ENST00000591501 1983 ntBASIC21.1■□□□□ 0.97
NPHP4O75161 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP4O75161 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NPHP4O75161 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
NPHP4O75161 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NPHP4O75161 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC21.1■□□□□ 0.97
NPHP4O75161 MME-218ENST00000625667 363 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP4O75161 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP4O75161 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP4O75161 HLA-DQB1-202ENST00000399079 1501 ntBASIC21.1■□□□□ 0.97
NPHP4O75161 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP4O75161 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP4O75161 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC21.09■□□□□ 0.97
NPHP4O75161 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 DPY19L2P5-201ENST00000456300 331 ntBASIC21.09■□□□□ 0.97
NPHP4O75161 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC21.09■□□□□ 0.97
NPHP4O75161 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC21.09■□□□□ 0.97
NPHP4O75161 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
NPHP4O75161 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 AC011471.3-201ENST00000623576 402 ntBASIC21.09■□□□□ 0.97
NPHP4O75161 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
NPHP4O75161 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NPHP4O75161 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP4O75161 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP4O75161 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP4O75161 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP4O75161 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP4O75161 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP4O75161 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP4O75161 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP4O75161 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.08■□□□□ 0.97
NPHP4O75161 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms