Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PCDHA1-201ENST00000378133 2726 ntBASIC13.73□□□□□ -0.21
CLCF1Q9UBD9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLCF1Q9UBD9 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.73□□□□□ -0.21
CLCF1Q9UBD9 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.73□□□□□ -0.21
CLCF1Q9UBD9 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AL162727.3-201ENST00000635661 2787 ntBASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 KRT8P35-201ENST00000483942 1338 ntBASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 ACTBP8-201ENST00000403258 1108 ntBASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 NUS1P3-201ENST00000423502 862 ntBASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AC004066.1-201ENST00000502488 802 ntBASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AC244669.2-201ENST00000612320 853 ntBASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLCF1Q9UBD9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 AC009090.5-201ENST00000624886 2285 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 C2orf27AP3-201ENST00000434123 579 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 FO681548.1-201ENST00000455617 1132 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 AC025279.2-201ENST00000569730 653 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 AL354718.3-201ENST00000616414 581 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 CR382287.1-201ENST00000623954 586 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 PRSS30P-206ENST00000641773 873 ntBASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.71□□□□□ -0.21
CLCF1Q9UBD9 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms