Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
COL12A1Q99715 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
COL12A1Q99715 AL672207.1-201ENST00000328462 1570 ntBASIC13.2□□□□□ -0.3
COL12A1Q99715 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
COL12A1Q99715 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL12A1Q99715 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.2□□□□□ -0.3
COL12A1Q99715 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
COL12A1Q99715 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC13.2□□□□□ -0.3
COL12A1Q99715 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC13.2□□□□□ -0.3
COL12A1Q99715 PSME2-217ENST00000615264 874 ntTSL 5 BASIC13.2□□□□□ -0.3
COL12A1Q99715 PSME2-218ENST00000630027 185 ntTSL 3 BASIC13.2□□□□□ -0.3
COL12A1Q99715 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL12A1Q99715 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL12A1Q99715 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL12A1Q99715 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC13.19□□□□□ -0.3
COL12A1Q99715 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 Z98259.2-201ENST00000641583 609 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
COL12A1Q99715 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
COL12A1Q99715 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
COL12A1Q99715 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 AC092638.2-201ENST00000441105 947 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC13.19□□□□□ -0.3
COL12A1Q99715 AC011462.4-201ENST00000616866 449 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 AP000593.2-201ENST00000542775 1433 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.19□□□□□ -0.3
COL12A1Q99715 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.19□□□□□ -0.3
COL12A1Q99715 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL12A1Q99715 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC13.19□□□□□ -0.3
COL12A1Q99715 AL645933.1-201ENST00000440087 609 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 AP005212.2-201ENST00000584979 510 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 DBP-202ENST00000593500 712 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.19□□□□□ -0.3
COL12A1Q99715 AC010503.4-201ENST00000615487 688 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 AC092127.1-201ENST00000567093 3455 ntBASIC13.19□□□□□ -0.3
COL12A1Q99715 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.18□□□□□ -0.3
COL12A1Q99715 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
COL12A1Q99715 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
COL12A1Q99715 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC13.18□□□□□ -0.3
COL12A1Q99715 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.18□□□□□ -0.3
COL12A1Q99715 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.18□□□□□ -0.3
COL12A1Q99715 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.18□□□□□ -0.3
COL12A1Q99715 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.18□□□□□ -0.3
COL12A1Q99715 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 Z69890.1-201ENST00000382990 339 ntBASIC13.18□□□□□ -0.3
COL12A1Q99715 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.18□□□□□ -0.3
COL12A1Q99715 AL354861.1-201ENST00000445213 355 ntBASIC13.18□□□□□ -0.3
COL12A1Q99715 RN7SL846P-201ENST00000467429 292 ntBASIC13.18□□□□□ -0.3
COL12A1Q99715 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL12A1Q99715 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
COL12A1Q99715 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.18□□□□□ -0.3
COL12A1Q99715 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC13.18□□□□□ -0.3
COL12A1Q99715 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms