Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.61■□□□□ 0.41
ERCC4Q92889 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
ERCC4Q92889 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ERCC4Q92889 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ERCC4Q92889 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ERCC4Q92889 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ERCC4Q92889 ZBED1P1-201ENST00000502364 1930 ntBASIC17.6■□□□□ 0.41
ERCC4Q92889 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
ERCC4Q92889 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.6■□□□□ 0.41
ERCC4Q92889 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
ERCC4Q92889 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.6■□□□□ 0.41
ERCC4Q92889 KRT18P32-201ENST00000424695 1287 ntBASIC17.6■□□□□ 0.41
ERCC4Q92889 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.6■□□□□ 0.41
ERCC4Q92889 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
ERCC4Q92889 MIR4469-201ENST00000583919 79 ntBASIC17.6■□□□□ 0.41
ERCC4Q92889 MTDHP5-201ENST00000598980 586 ntBASIC17.6■□□□□ 0.41
ERCC4Q92889 AL133215.2-201ENST00000609242 977 ntBASIC17.6■□□□□ 0.41
ERCC4Q92889 AC018529.1-201ENST00000613063 361 ntBASIC17.6■□□□□ 0.41
ERCC4Q92889 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 AL390755.1-201ENST00000623716 2027 ntBASIC17.6■□□□□ 0.41
ERCC4Q92889 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
ERCC4Q92889 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ERCC4Q92889 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
ERCC4Q92889 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 AC084364.1-201ENST00000551967 1556 ntBASIC17.59■□□□□ 0.41
ERCC4Q92889 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.59■□□□□ 0.41
ERCC4Q92889 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.59■□□□□ 0.41
ERCC4Q92889 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.59■□□□□ 0.41
ERCC4Q92889 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.59■□□□□ 0.41
ERCC4Q92889 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.59■□□□□ 0.41
ERCC4Q92889 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.59■□□□□ 0.41
ERCC4Q92889 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.59■□□□□ 0.41
ERCC4Q92889 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.59■□□□□ 0.41
ERCC4Q92889 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.59■□□□□ 0.41
ERCC4Q92889 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.59■□□□□ 0.41
ERCC4Q92889 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.59■□□□□ 0.41
ERCC4Q92889 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.59■□□□□ 0.41
ERCC4Q92889 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.59■□□□□ 0.41
ERCC4Q92889 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.59■□□□□ 0.41
ERCC4Q92889 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.59■□□□□ 0.41
ERCC4Q92889 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.59■□□□□ 0.41
ERCC4Q92889 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 INTS4P1-203ENST00000641008 3683 ntBASIC17.59■□□□□ 0.41
ERCC4Q92889 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ERCC4Q92889 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ERCC4Q92889 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.58■□□□□ 0.41
ERCC4Q92889 AC007292.2-201ENST00000593524 1812 ntBASIC17.58■□□□□ 0.41
ERCC4Q92889 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ERCC4Q92889 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
ERCC4Q92889 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.58■□□□□ 0.41
ERCC4Q92889 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ERCC4Q92889 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ERCC4Q92889 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ERCC4Q92889 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.58■□□□□ 0.41
ERCC4Q92889 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ERCC4Q92889 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
ERCC4Q92889 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.58■□□□□ 0.41
ERCC4Q92889 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ERCC4Q92889 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.58■□□□□ 0.4
ERCC4Q92889 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms