Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AC026803.1-201ENST00000569130 274 ntBASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AC138894.2-201ENST00000602838 371 ntBASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AC009084.3-201ENST00000623356 437 ntBASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 AC011840.2-201ENST00000563063 1520 ntBASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 AC079328.2-201ENST00000561241 3354 ntBASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 AC012441.2-201ENST00000444843 739 ntBASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 TNRC18P3-201ENST00000441896 2691 ntBASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 CYP51A1P3-201ENST00000400072 1428 ntBASIC20.53■□□□□ 0.88
KRT28Q7Z3Y7 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 RBM38-204ENST00000371219 760 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 STUB1-204ENST00000564370 875 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 GMFG-209ENST00000600322 622 ntTSL 5 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT28Q7Z3Y7 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
KRT28Q7Z3Y7 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
KRT28Q7Z3Y7 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
KRT28Q7Z3Y7 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC20.52■□□□□ 0.87
KRT28Q7Z3Y7 AC074138.1-201ENST00000611182 1303 ntBASIC20.52■□□□□ 0.87
KRT28Q7Z3Y7 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 RPS9P1-201ENST00000419943 583 ntBASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC20.51■□□□□ 0.87
KRT28Q7Z3Y7 PFN2-206ENST00000461930 606 ntTSL 4 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms