Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.58□□□□□ -0.4
LMO4P61968 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
LMO4P61968 AGER-203ENST00000375065 665 ntTSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 GHSR-202ENST00000427970 912 ntBASIC12.58□□□□□ -0.4
LMO4P61968 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC12.58□□□□□ -0.4
LMO4P61968 AL023775.1-201ENST00000454907 1746 ntBASIC12.58□□□□□ -0.4
LMO4P61968 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC12.58□□□□□ -0.4
LMO4P61968 AL391280.1-201ENST00000506969 1062 ntBASIC12.58□□□□□ -0.4
LMO4P61968 AP001258.2-201ENST00000529891 490 ntBASIC12.58□□□□□ -0.4
LMO4P61968 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC12.58□□□□□ -0.4
LMO4P61968 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC12.58□□□□□ -0.4
LMO4P61968 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 RN7SL713P-201ENST00000582127 302 ntBASIC12.58□□□□□ -0.4
LMO4P61968 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 OR10B1P-201ENST00000601666 907 ntBASIC12.58□□□□□ -0.4
LMO4P61968 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 AL096828.3-201ENST00000615354 462 ntBASIC12.58□□□□□ -0.4
LMO4P61968 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.58□□□□□ -0.4
LMO4P61968 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC12.58□□□□□ -0.4
LMO4P61968 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
LMO4P61968 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
LMO4P61968 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.58□□□□□ -0.4
LMO4P61968 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.57□□□□□ -0.4
LMO4P61968 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
LMO4P61968 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
LMO4P61968 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.57□□□□□ -0.4
LMO4P61968 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
LMO4P61968 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC12.57□□□□□ -0.4
LMO4P61968 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.57□□□□□ -0.4
LMO4P61968 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.57□□□□□ -0.4
LMO4P61968 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC12.57□□□□□ -0.4
LMO4P61968 AP003171.2-201ENST00000528208 925 ntBASIC12.57□□□□□ -0.4
LMO4P61968 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC12.57□□□□□ -0.4
LMO4P61968 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 PPY2P-201ENST00000582808 702 ntBASIC12.57□□□□□ -0.4
LMO4P61968 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 AC004466.1-201ENST00000599515 1080 ntBASIC12.57□□□□□ -0.4
LMO4P61968 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 AC073413.1-201ENST00000603927 732 ntBASIC12.57□□□□□ -0.4
LMO4P61968 SNX12-206ENST00000622259 661 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
LMO4P61968 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms