Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.86□□□□□ -0.19
CLRN1P58418 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.86□□□□□ -0.19
CLRN1P58418 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 AC006058.4-201ENST00000624016 1670 ntBASIC13.86□□□□□ -0.19
CLRN1P58418 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CLRN1P58418 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CLRN1P58418 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.86□□□□□ -0.19
CLRN1P58418 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CLRN1P58418 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 AC055876.3-201ENST00000431496 288 ntBASIC13.86□□□□□ -0.19
CLRN1P58418 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.86□□□□□ -0.19
CLRN1P58418 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.86□□□□□ -0.19
CLRN1P58418 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.86□□□□□ -0.19
CLRN1P58418 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.86□□□□□ -0.19
CLRN1P58418 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.86□□□□□ -0.19
CLRN1P58418 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.86□□□□□ -0.19
CLRN1P58418 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CLRN1P58418 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC13.86□□□□□ -0.19
CLRN1P58418 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.86□□□□□ -0.19
CLRN1P58418 AC138649.4-201ENST00000612222 287 ntBASIC13.86□□□□□ -0.19
CLRN1P58418 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.86□□□□□ -0.19
CLRN1P58418 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.86□□□□□ -0.19
CLRN1P58418 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
CLRN1P58418 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CLRN1P58418 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.86□□□□□ -0.19
CLRN1P58418 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.86□□□□□ -0.19
CLRN1P58418 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.85□□□□□ -0.19
CLRN1P58418 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC13.85□□□□□ -0.19
CLRN1P58418 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.85□□□□□ -0.19
CLRN1P58418 ZNF890P-202ENST00000530367 1156 ntBASIC13.85□□□□□ -0.19
CLRN1P58418 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.85□□□□□ -0.19
CLRN1P58418 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CLRN1P58418 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
CLRN1P58418 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLRN1P58418 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CLRN1P58418 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.85□□□□□ -0.19
CLRN1P58418 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLRN1P58418 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CLRN1P58418 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLRN1P58418 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms