Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.86■□□□□ 0.29
HTTP42858 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HTTP42858 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.85■□□□□ 0.29
HTTP42858 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 AC006122.1-201ENST00000493323 440 ntBASIC16.85■□□□□ 0.29
HTTP42858 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC16.85■□□□□ 0.29
HTTP42858 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HTTP42858 MIR6769A-201ENST00000617340 73 ntBASIC16.85■□□□□ 0.29
HTTP42858 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.85■□□□□ 0.29
HTTP42858 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.85■□□□□ 0.29
HTTP42858 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.85■□□□□ 0.29
HTTP42858 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.85■□□□□ 0.29
HTTP42858 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.85■□□□□ 0.29
HTTP42858 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.85■□□□□ 0.29
HTTP42858 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
HTTP42858 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 AP001184.1-201ENST00000637936 376 ntBASIC16.85■□□□□ 0.29
HTTP42858 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 AL672207.1-201ENST00000328462 1570 ntBASIC16.85■□□□□ 0.29
HTTP42858 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 AP000358.1-201ENST00000456260 156 ntBASIC16.85■□□□□ 0.29
HTTP42858 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC16.85■□□□□ 0.29
HTTP42858 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
HTTP42858 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC16.85■□□□□ 0.29
HTTP42858 PTPN20CP-201ENST00000614090 920 ntBASIC16.85■□□□□ 0.29
HTTP42858 LINC01783-202ENST00000614408 828 ntBASIC16.85■□□□□ 0.29
HTTP42858 BX284668.2-205ENST00000619677 828 ntBASIC16.85■□□□□ 0.29
HTTP42858 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HTTP42858 AC006058.4-201ENST00000624016 1670 ntBASIC16.85■□□□□ 0.29
HTTP42858 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
HTTP42858 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HTTP42858 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HTTP42858 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.84■□□□□ 0.29
HTTP42858 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.84■□□□□ 0.29
HTTP42858 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.84■□□□□ 0.29
HTTP42858 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.84■□□□□ 0.29
HTTP42858 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.84■□□□□ 0.29
HTTP42858 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
HTTP42858 MIR566-201ENST00000385187 94 ntBASIC16.84■□□□□ 0.29
HTTP42858 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.84■□□□□ 0.29
HTTP42858 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.84■□□□□ 0.29
HTTP42858 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC16.84■□□□□ 0.29
HTTP42858 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 AC073592.2-201ENST00000623062 780 ntBASIC16.84■□□□□ 0.29
HTTP42858 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HTTP42858 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 LINC01815-202ENST00000641468 1409 ntBASIC16.84■□□□□ 0.29
HTTP42858 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.84■□□□□ 0.29
HTTP42858 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms