Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 MIR4522-201ENST00000584932 87 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 AL022334.2-201ENST00000610000 484 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 AC025262.2-201ENST00000623975 1056 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 AC092299.1-201ENST00000632679 757 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL5A3P25940 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 AC144522.1-201ENST00000625111 1658 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.91■□□□□ 0.62
COL5A3P25940 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.91■□□□□ 0.62
COL5A3P25940 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.91■□□□□ 0.62
COL5A3P25940 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.91■□□□□ 0.62
COL5A3P25940 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.91■□□□□ 0.62
COL5A3P25940 MIR4649-201ENST00000582839 64 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.91■□□□□ 0.62
COL5A3P25940 BX088702.1-201ENST00000610784 235 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 PCDH8P1-201ENST00000428983 2773 ntBASIC18.91■□□□□ 0.62
COL5A3P25940 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.9■□□□□ 0.62
COL5A3P25940 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.9■□□□□ 0.62
COL5A3P25940 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC18.9■□□□□ 0.62
COL5A3P25940 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.9■□□□□ 0.62
COL5A3P25940 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 AL583805.1-201ENST00000391389 531 ntBASIC18.9■□□□□ 0.62
COL5A3P25940 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
COL5A3P25940 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18.9■□□□□ 0.62
COL5A3P25940 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.9■□□□□ 0.62
COL5A3P25940 AC009884.2-201ENST00000603110 324 ntBASIC18.9■□□□□ 0.62
COL5A3P25940 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
COL5A3P25940 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.9■□□□□ 0.62
COL5A3P25940 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 AC025271.4-201ENST00000621477 1726 ntBASIC18.9■□□□□ 0.62
COL5A3P25940 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
COL5A3P25940 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A3P25940 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL5A3P25940 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.89■□□□□ 0.62
COL5A3P25940 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.89■□□□□ 0.61
COL5A3P25940 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.89■□□□□ 0.61
COL5A3P25940 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A3P25940 DUTP3-201ENST00000450025 415 ntBASIC18.89■□□□□ 0.61
COL5A3P25940 FTH1P22-201ENST00000456305 520 ntBASIC18.89■□□□□ 0.61
COL5A3P25940 ORAOV1P1-201ENST00000503108 395 ntBASIC18.89■□□□□ 0.61
COL5A3P25940 POU5F1P2-201ENST00000521750 823 ntBASIC18.89■□□□□ 0.61
COL5A3P25940 PGAM1P5-201ENST00000548011 764 ntBASIC18.89■□□□□ 0.61
COL5A3P25940 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL5A3P25940 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.89■□□□□ 0.61
COL5A3P25940 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A3P25940 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A3P25940 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL5A3P25940 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A3P25940 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 PCDHB19P-201ENST00000570871 2371 ntBASIC18.89■□□□□ 0.61
COL5A3P25940 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.89■□□□□ 0.61
COL5A3P25940 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
COL5A3P25940 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A3P25940 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.89■□□□□ 0.61
COL5A3P25940 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms