Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1FO60840 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CACNA1FO60840 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.09■□□□□ 0.65
CACNA1FO60840 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC19.09■□□□□ 0.65
CACNA1FO60840 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1FO60840 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.08■□□□□ 0.65
CACNA1FO60840 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CACNA1FO60840 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1FO60840 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC19.08■□□□□ 0.65
CACNA1FO60840 FAM86HP-204ENST00000513466 959 ntBASIC19.08■□□□□ 0.65
CACNA1FO60840 AC005730.2-201ENST00000564549 1184 ntBASIC19.08■□□□□ 0.65
CACNA1FO60840 OR10B1P-201ENST00000601666 907 ntBASIC19.08■□□□□ 0.65
CACNA1FO60840 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC19.08■□□□□ 0.65
CACNA1FO60840 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1FO60840 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1FO60840 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1FO60840 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1FO60840 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1FO60840 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.08■□□□□ 0.64
CACNA1FO60840 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1FO60840 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1FO60840 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1FO60840 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1FO60840 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1FO60840 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1FO60840 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1FO60840 RN7SKP230-201ENST00000365642 335 ntBASIC19.08■□□□□ 0.64
CACNA1FO60840 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.08■□□□□ 0.64
CACNA1FO60840 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.08■□□□□ 0.64
CACNA1FO60840 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC19.08■□□□□ 0.64
CACNA1FO60840 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.08■□□□□ 0.64
CACNA1FO60840 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.08■□□□□ 0.64
CACNA1FO60840 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CACNA1FO60840 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CACNA1FO60840 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 AC009093.2-202ENST00000620513 2079 ntBASIC19.07■□□□□ 0.64
CACNA1FO60840 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CACNA1FO60840 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CACNA1FO60840 AC108725.1-201ENST00000495472 409 ntBASIC19.07■□□□□ 0.64
CACNA1FO60840 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.07■□□□□ 0.64
CACNA1FO60840 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CACNA1FO60840 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 POR-201ENST00000394893 2532 ntTSL 5 BASIC19.07■□□□□ 0.64
CACNA1FO60840 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
CACNA1FO60840 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CACNA1FO60840 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1FO60840 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1FO60840 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
CACNA1FO60840 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.06■□□□□ 0.64
CACNA1FO60840 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CACNA1FO60840 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CACNA1FO60840 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 MIR1247-201ENST00000408206 136 ntBASIC19.06■□□□□ 0.64
CACNA1FO60840 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC19.06■□□□□ 0.64
CACNA1FO60840 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CACNA1FO60840 COX5BP1-201ENST00000507622 393 ntBASIC19.06■□□□□ 0.64
CACNA1FO60840 AC131206.1-201ENST00000538078 1211 ntBASIC19.06■□□□□ 0.64
CACNA1FO60840 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC19.06■□□□□ 0.64
CACNA1FO60840 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CACNA1FO60840 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 ZEB1-AS1-208ENST00000607166 2503 ntBASIC19.06■□□□□ 0.64
CACNA1FO60840 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC19.06■□□□□ 0.64
CACNA1FO60840 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CACNA1FO60840 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.06■□□□□ 0.64
CACNA1FO60840 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 MIR326-201ENST00000362220 95 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms